Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 109 4e-19
seq149743 107 1e-18
seq270304 102 5e-17
seq171037 95.1 8e-15
seq32333 95.1 8e-15
seq92807 93.3 3e-14
>seq157544
Length=1252
Score = 109 bits (120), Expect = 4e-19
Identities = 154/213 (72%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||| ||||| ||||||||||| ||||| || |||| | || | || |||| ||
Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||| || ||||| ||||| || || ||||| | |||| ||| || || ||| ||||||
Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTT 1117
Query 38234 TTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291
|||||||||| | |||| ||| || ||||| || | ||| ||||| || ||
Sbjct 1116 AGCTTTCACATTCTCTATCGTATCGCTCGAC--TCAACCTCGAGTGTGATAGTCTTTCCA 1059
Query 38292 GTCAAGGTTTTCACGAATATCTGCAT-GTTTTA 38323
|| | ||| || |||||||| ||||| ||||||
Sbjct 1058 GTAAGGGTCTTTACGAATATTTGCATCGTTTTA 1026
>seq149743
Length=1327
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 695 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCCGCTATCGGTCTCGT 754
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 755 GCCGGTATTTAGCCTTA 771
>seq270304
Length=645
Score = 102 bits (112), Expect = 5e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||||||||| |||||||| ||||| || ||||| | ||| | || || | ||
Sbjct 101 ATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATCTTCAAGCTG 160
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||||| || || || || | ||| ||||| ||||| | ||||| || || || ||
Sbjct 161 CTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATCTTGTATCTT 220
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
| ||||||||| | |||||||| | ||||||||||| || |||||||| || ||
Sbjct 221 TGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGTTTTTCCGGT 280
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
|| ||||| || || || |||||
Sbjct 281 TAATGTTTTAACAAAAATTTGCAT 304
>seq171037
Length=1136
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
|| || |||||||| ||||| || || ||| ||| |||| |||||||||||||||
Sbjct 979 TCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAA 920
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|||| ||||| || || | ||| | |||||||| || ||||| || | ||
Sbjct 919 ATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTT 860
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| || || || | ||| ||||| || ||||| || || ||||||| ||||| ||
Sbjct 859 TCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACA 800
Query 38307 AATATCTGCATG 38318
|| |||||||||
Sbjct 799 AAAATCTGCATG 788
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||| | ||||||||| ||| || |||||||||||||| ||
Sbjct 787 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 728
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | | || || | ||||||||| ||||| || || | ||||||||| | ||
Sbjct 727 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 668
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| ||||| ||| || ||| || |||| | || || | ||| |||
Sbjct 667 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 608
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| || || || |||| ||||| || ||||| ||||| ||
Sbjct 607 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTT 558
>seq32333
Length=4216
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
|| || |||||||| ||||| || || ||| ||| |||| |||||||||||||||
Sbjct 3797 TCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAA 3856
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|||| ||||| || || | ||| | |||||||| || ||||| || | ||
Sbjct 3857 ATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTT 3916
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| || || || | ||| ||||| || ||||| || || ||||||| ||||| ||
Sbjct 3917 TCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACA 3976
Query 38307 AATATCTGCATG 38318
|| |||||||||
Sbjct 3977 AAAATCTGCATG 3988
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||| | ||||||||| ||| || |||||||||||||| ||
Sbjct 3989 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 4048
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | | || || | ||||||||| ||||| || || | ||||||||| | ||
Sbjct 4049 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 4108
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| ||||| ||| || ||| || |||| | || || | ||| |||
Sbjct 4109 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 4168
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||| || || || |||| ||||| || ||||| |||||
Sbjct 4169 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCAT 4215
>seq92807
Length=2138
Score = 93.3 bits (102), Expect = 3e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003
|| ||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 512 TTACTCTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGATCGCCATCGGACT 571
Query 20004 CGCGGTAATATTTAGCCTT 20022
|| | |||||||||||
Sbjct 572 CGTGCCTGTATTTAGCCTT 590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333655609892738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |