Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq157544 132 4e-26 seq171037 122 8e-23 seq32333 122 8e-23 >seq157544 Length=1252 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||||||||| |||||||| | || || || | |||||| |||| || ||||| Sbjct 1029 AACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTC 1088 Query 25055 GTCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || || || ||| || |||| |||| ||| || || || || || ||||| | Sbjct 1089 GAGCGATACGATAGAGAATGTGAAAGCTAAAATTCA-GGATAAGGAGGGCATCCCACCGG 1147 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | |||||||| |||||||| |||| |||| ||||||| || || | Sbjct 1148 ATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACT 1207 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||| ||||| || |||||| | || || Sbjct 1208 ACAACATTCAAAAGGAATCAACTCTACATCTTGTCCT 1244 >seq171037 Length=1136 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || |||| || || | || || | |||||||| || Sbjct 560 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 619 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | ||| | || | ||| ||||| ||||| ||||||||||| | Sbjct 620 TGACACAATAGAGAACGTAAAGTCGAAGATTCAA-GACAAGGAAGGTATTCCACCTGATC 678 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||||||||| || |||||| | ||||||| | || | ||||||| Sbjct 679 AACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACA 738 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| ||||| || || || ||| | ||||| Sbjct 739 ATATTCAGAAAGAGTCAACTCTTCATCTTGTGCT 772 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| |||| || || | || || | ||||| || || | Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| | || || |||| |||| || || |||||||| ||||| |||||||| Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAA-GATAAAGAAGGAATTCCCCCTGACCA 907 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||||||||| |||||| ||||||| ||| || | |||||| || Sbjct 908 GCAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAA 967 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| |||||||| || | || | |||||||| || || ||||| Sbjct 968 TATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 1015 >seq32333 Length=4216 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || |||| || || | || || | |||||||| || Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | ||| | || | ||| ||||| ||||| ||||||||||| | Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAA-GACAAGGAAGGTATTCCACCTGATC 4098 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||||||||| || |||||| | ||||||| | || | ||||||| Sbjct 4097 AACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACA 4038 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| ||||| || || || ||| | ||||| Sbjct 4037 ATATTCAGAAAGAGTCAACTCTTCATCTTGTGCT 4004 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| |||| || || | || || | ||||| || || | Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| | || || |||| |||| || || |||||||| ||||| |||||||| Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAA-GATAAAGAAGGAATTCCCCCTGACCA 3869 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||||||||| |||||| ||||||| ||| || | |||||| || Sbjct 3868 GCAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAA 3809 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| |||||||| || | || | |||||||| || || ||||| Sbjct 3808 TATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 3761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431657043628370