Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 132 4e-26
seq171037 122 8e-23
seq32333 122 8e-23
>seq157544
Length=1252
Score = 132 bits (146), Expect = 4e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||||||||| |||||||| | || || || | |||||| |||| || |||||
Sbjct 1029 AACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTC 1088
Query 25055 GTCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
| || || || ||| || |||| |||| ||| || || || || || ||||| |
Sbjct 1089 GAGCGATACGATAGAGAATGTGAAAGCTAAAATTCA-GGATAAGGAGGGCATCCCACCGG 1147
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || ||||| | |||||||| |||||||| |||| |||| ||||||| || || |
Sbjct 1148 ATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACT 1207
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| |||||||| ||||| || |||||| | || ||
Sbjct 1208 ACAACATTCAAAAGGAATCAACTCTACATCTTGTCCT 1244
>seq171037
Length=1136
Score = 122 bits (134), Expect = 8e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||||||||| || || |||| || || | || || | |||||||| ||
Sbjct 560 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 619
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||| || ||| | ||| | || | ||| ||||| ||||| ||||||||||| |
Sbjct 620 TGACACAATAGAGAACGTAAAGTCGAAGATTCAA-GACAAGGAAGGTATTCCACCTGATC 678
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || |||||||||| || |||||| | ||||||| | || | |||||||
Sbjct 679 AACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACA 738
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||| ||||| || || || ||| | |||||
Sbjct 739 ATATTCAGAAAGAGTCAACTCTTCATCTTGTGCT 772
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || ||| |||| || || | || || | ||||| || || |
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| | || || |||| |||| || || |||||||| ||||| ||||||||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAA-GATAAAGAAGGAATTCCCCCTGACCA 907
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | ||||||||||| |||||| ||||||| ||| || | |||||| ||
Sbjct 908 GCAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAA 967
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| |||||||| || | || | |||||||| || || |||||
Sbjct 968 TATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 1015
>seq32333
Length=4216
Score = 122 bits (134), Expect = 8e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||||||||| || || |||| || || | || || | |||||||| ||
Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||| || ||| | ||| | || | ||| ||||| ||||| ||||||||||| |
Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAA-GACAAGGAAGGTATTCCACCTGATC 4098
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || |||||||||| || |||||| | ||||||| | || | |||||||
Sbjct 4097 AACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACA 4038
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||| ||||| || || || ||| | |||||
Sbjct 4037 ATATTCAGAAAGAGTCAACTCTTCATCTTGTGCT 4004
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || ||| |||| || || | || || | ||||| || || |
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| | || || |||| |||| || || |||||||| ||||| ||||||||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAA-GATAAAGAAGGAATTCCCCCTGACCA 3869
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | ||||||||||| |||||| ||||||| ||| || | |||||| ||
Sbjct 3868 GCAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAA 3809
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| |||||||| || | || | |||||||| || || |||||
Sbjct 3808 TATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 3761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431657043628370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |