Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq75644 208 8e-49 seq110960 196 5e-45 seq150668 149 7e-31 >seq75644 Length=2520 Score = 208 bits (230), Expect = 8e-49 Identities = 599/922 (65%), Gaps = 41/922 (4%) Strand=Plus/Plus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||||||||||||||| || |||||||| ||||| || || || | || || Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGAT--- 639 Query 92862 ATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGT 92915 |||| | | | | ||||||| || || || ||| || | ||| ||||| Sbjct 640 ATTCTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGT 698 Query 92916 ACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTA 92975 | | || | ||| || |||||||| | ||| | |||||| |||||| ||||| || | Sbjct 699 ATAGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAA 758 Query 92976 GAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 || ||| |||| || || | |||||| | || || || | | || || || | Sbjct 759 TCAGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGA 818 Query 93036 AGATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 | || | || | | | | | | | ||||| |||| || ||| ||| | ||| Sbjct 819 ATATAGCATAAACACGTTCCTTATCGGGCTTTTTC-ACGATATGTTTGAACAGAAGGCAA 877 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 ||||||||||| || | |||||||| || || | ||||||||||| || || ||| Sbjct 878 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 937 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | ||| || || ||||| ||||||||||| || |||||||| || ||||| || | Sbjct 938 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 997 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| | || ||||| || ||||||| |||||||| ||| || | ||| Sbjct 998 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATC 1057 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || | | ||||| | || ||||| | | |||| || || ||| || ||||| Sbjct 1058 CAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTTGTGATGGCATTAAAC 1117 Query 93335 AGGTAATCTC--------------------------GCTCGTCC---GAATCTCGTATGT 93365 | | |||||| || ||| | |||||| || | Sbjct 1118 AAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATAT 1177 Query 93366 ATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATC 93425 ||||||| || | ||| ||||||| || || || | ||| || ||||| || || | | Sbjct 1178 ATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGC 1237 Query 93426 CGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTT 93485 |||| || |||| | || | | || ||||||||| ||| | || || ||||||| Sbjct 1238 CGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTTT 1297 Query 93486 CATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCT 93545 | || || ||||| || || || ||||| | | | | |||||||||| || Sbjct 1298 CCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCT 1357 Query 93546 CATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAG 93605 | | ||||| |||||| | | ||||| || | ||| || ||||| || | Sbjct 1358 CTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTG 1417 Query 93606 TCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAA 93665 ||| || || || | || |||||||| | | ||| || || ||||||| ||||| | Sbjct 1418 ACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGCA 1477 Query 93666 ATATGACAAAACGATTAGGGTT 93687 |||| ||||| ||| |||||| Sbjct 1478 ATATCACAAACCGACGAGGGTT 1499 >seq110960 Length=1818 Score = 196 bits (216), Expect = 5e-45 Identities = 599/925 (65%), Gaps = 46/925 (5%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||||||||||||||| || |||||||| || || || || || | || || Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGAT--- 1180 Query 92862 ATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGT 92915 |||| | | | | ||||||| || || || ||| || | ||| ||||| Sbjct 1179 ATTCTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGT 1121 Query 92916 ACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTA 92975 ||| || | ||| || |||||||| | ||| | |||||| |||||| ||||| || | Sbjct 1120 ACAGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAA 1061 Query 92976 GAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 || || |||| || || | |||||| | || || || | | || || || | Sbjct 1060 TCAGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGA 1001 Query 93036 AGATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 | || | || | | | | | | | ||||| |||| || ||| ||| | ||| Sbjct 1000 ATATAGCATAAACACGTTCCTTATCGGGCTTTTTC-ACGATATGTTTGAACAGAAGGCAA 942 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 ||||||||||| || | |||||||| || || | ||||||||||| || || ||| Sbjct 941 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 882 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | ||| || || ||||| ||||||||||| || |||||||| || ||||| || | Sbjct 881 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 822 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| | || ||||| || ||||||| |||||||| ||| || | ||| Sbjct 821 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCAATC 762 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC--GATAGCGTTAA 93332 || | | ||||| | || ||||| | | |||| | | | ||| ||| || |||| Sbjct 761 CAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAA--TCGAGGTTCGTGATGGCATTAA 704 Query 93333 ATAGGTAATCTC---------------------------GCTCGTCC---GAATCTCGTA 93362 | | | |||||| || ||| | |||||| | Sbjct 703 ACAAGAAATCTCTAAGAAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGA 644 Query 93363 TGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGA 93422 | || ||||| || | ||| ||||||| || ||||| | ||| || ||||| || || | Sbjct 643 TATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCA 584 Query 93423 ATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGAT 93482 ||||| || |||| | || | | || ||||||||| ||| | || || |||| Sbjct 583 TGCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGAT 524 Query 93483 TTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTT 93542 |||| || || ||||| || || || ||||| | | | | |||||||||| Sbjct 523 TTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTC 464 Query 93543 TCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGA 93602 ||| | ||||| |||||| | | ||||| || | ||| || ||||| | Sbjct 463 GCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAA 404 Query 93603 CAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTG 93662 | | ||| || || || | || |||||||| | | ||| || || ||||||| |||| Sbjct 403 CTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTG 344 Query 93663 GAAATATGACAAAACGATTAGGGTT 93687 | ||||| || || ||| |||||| Sbjct 343 GCAATATCACGAACCGACGAGGGTT 319 >seq150668 Length=1318 Score = 149 bits (164), Expect = 7e-31 Identities = 513/790 (65%), Gaps = 44/790 (6%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| ||||| |||||||| || |||| | | | |||||||| || | |||| || Sbjct 1041 ATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACTGAC 982 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | ||| || || | || |||| ||| ||| || || || | || || || Sbjct 981 GGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGA-AT 923 Query 93046 ---TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 | |||| || || | ||||| | || || || | | | ||| || || || Sbjct 922 GGATCCTCTTCTCTTCCG--GTTTTGCAATGATATGCTTAAATAGGAGGCAAGCGAAATC 865 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 | ||| | || || ||||| ||| | |||||||||||| || | || || | || Sbjct 864 GCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGGCATAAG 805 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || || || ||||||||||| | ||||| || || || || || | |||||| || Sbjct 804 ACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACCTTCTAC 745 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTT 93279 |||||||| || | | |||||| | || || ||||| | | ||||| | Sbjct 744 AGCTGCAAAAGCTGCGACACGTTCAGAGAA---TGGAGAATTTGTATCTCCAATCCAGTC 688 Query 93280 TAAAGCCCAAT-CGGCTTTTTTCTTAA----TACAAGGTAGTGTTTCGAT--AGC----- 93327 | |||||| | || ||||||||| | | |||| | | || || ||| Sbjct 687 GAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTAAGCAAAAA 628 Query 93328 GT---TA------AATAGGTA------ATCTCGCTCGTCC---GAATCTCGTATGTATGT 93369 || || || || || | || || || ||||||| ||||| || Sbjct 627 GTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTGATGTAAGT 568 Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 ||| || | ||||| |||||||||||||| | |||||| || || ||||| | || || Sbjct 567 ATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGTATGCCATA 508 Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATT 93489 ||||| | | |||| | |||||| |||||||| ||| | ||| | |||||||| Sbjct 507 AAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGATAAGATTTTCCAA 448 Query 93490 GACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC 93549 ||||| ||||| || || ||||| || | | | || ||| || ||| | Sbjct 447 AACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCGTCGCTCTCC 388 Query 93550 ATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 ||||| || ||||| ||| || ||||| || | ||| ||||| || || |||| Sbjct 387 CGGCTTAAGTGAATTCCAATGAGGAAAG-TCTTTAGACAAATCAACTTCCTCTACTGTCC 329 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATA 93668 | || || || | ||||| || || | | ||| ||||| |||| | ||| ||||| | Sbjct 328 AGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAATGGGAAACA 269 Query 93669 TGACAAAACG 93678 | ||||| || Sbjct 268 TTACAAAGCG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554658429457520