Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 132 4e-26
seq171037 127 2e-24
seq32333 125 6e-24
seq270304 123 2e-23
seq256849 96.9 3e-15
>seq157544
Length=1252
Score = 132 bits (146), Expect = 4e-26
Identities = 154/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
|| ||||||||| || || || || | || || || || |||| || || || || |
Sbjct 1029 AACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTC 1088
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| |||||| | || || | ||| |||||||| || |||||||| || ||||| ||
Sbjct 1089 GAGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGA 1148
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
||| || ||||| || ||||| ||||||||| |||||||| ||||| | || || ||
Sbjct 1149 TCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTA 1208
Query 22395 CAACATTCAAAAAGAATCCACCATACAT 22422
|||||||||||| ||||| || |||||
Sbjct 1209 CAACATTCAAAAGGAATCAACTCTACAT 1236
>seq171037
Length=1136
Score = 127 bits (140), Expect = 2e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| |||||||| ||||| ||||| | || || || || | ||||||||||||||| |
Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | || | | || || |||||||||||||| ||||||||||| |||
Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|||||| | ||||| ||||| || ||||| | || ||| | | ||| | || ||||||
Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTAC 737
Query 22396 AACATTCAAAAAGAATCCAC 22415
|| ||||| ||||| || ||
Sbjct 738 AATATTCAGAAAGAGTCAAC 757
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||||||||||||| | || || || || | ||| | ||||| ||| | |
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || ||||| | |||||| ||||| ||||| || || || ||||| || || ||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| | || |||||||| ||||| |||| || || || | |||||||| ||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| |||||||| ||
Sbjct 969 ATTCAGAAAGAATCTAC 985
>seq32333
Length=4216
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| ||||| | || || || || | ||||||||||||||| | |
Sbjct 4215 ATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAGT 4156
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | || || |||||||||||||| ||||||||||| ||||||
Sbjct 4155 GACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 4096
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | ||||| ||||| || ||||| | || ||| | | ||| | || ||||||||
Sbjct 4095 CAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAAT 4036
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| ||||| || ||
Sbjct 4035 ATTCAGAAAGAGTCAAC 4019
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||||||||||||| | || || || || | ||| | ||||| ||| | |
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || ||||| | |||||| ||||| ||||| || || || ||||| || || ||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| | || |||||||| ||||| |||| || || || | |||||||| ||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| |||||||| ||
Sbjct 3807 ATTCAGAAAGAATCTAC 3791
>seq270304
Length=645
Score = 123 bits (136), Expect = 2e-23
Identities = 154/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
||||||||||||||||||||| |||||||| ||||| | || || ||||| ||| | ||
Sbjct 305 GATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGAC 246
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|||| || || || | || ||| || ||||| ||||| |||||||| | |||||
Sbjct 245 AAATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCA 186
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
||| | ||||| || || || || ||| | || ||| || || | || || || ||
Sbjct 185 GCAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAA 126
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTT 22428
|| ||||| ||||| || | ||| |||||
Sbjct 125 TATACAAAAGGAATCTACTCTTCATCTAGTT 95
>seq256849
Length=689
Score = 96.9 bits (106), Expect = 3e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365
||||| || |||||||| || ||||| || || || ||||| || ||||| ||||| |||
Sbjct 503 ATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAGCGTCTAATTTTTGCAGGCAAGCAG 562
Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421
|||||||| ||||| | || || |||||||||||||| ||||| || ||||
Sbjct 563 CTAGAGGATGGTCGCACTTTGTCAGACTACAACATTCAAAAGGAATCAACTCTACA 618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418109486596870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |