Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10312 100 6e-16 seq241888 98.7 2e-15 seq156076 91.5 3e-13 seq35201 91.5 3e-13 seq126173 86.0 1e-11 seq202838 84.2 4e-11 >seq10312 Length=6588 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 907 ATAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCG 966 Query 142561 AGCCCCACATCGGGC 142575 ||||||||||||||| Sbjct 967 AGCCCCACATCGGGC 981 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 79 TAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 138 Query 142562 GCCCCACATCGGGC 142575 |||||||||||||| Sbjct 139 GCCCCACATCGGGC 152 >seq241888 Length=741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 276 TAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 335 Query 142562 GCCCCACATCGGGC 142575 |||||||||||||| Sbjct 336 GCCCCACATCGGGC 349 >seq156076 Length=1265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| | ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| Sbjct 185 ATGTCCCGGTGGCGCAATGGATAGCGCGTCGGACTTCTAATCCGGAGGTTGCGGGTTCGA 126 Query 142111 CCCCCGCCAGAGACG 142125 |||||| | |||| Sbjct 125 GTCCCGCCCGGGACG 111 >seq35201 Length=4042 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1639 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1580 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1579 CCCCACGTTGGGC 1567 >seq126173 Length=1598 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1529 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1588 Query 142564 CCCAC 142568 ||||| Sbjct 1589 CCCAC 1593 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 1 CGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 60 Query 142567 ACATCGGGC 142575 || | |||| Sbjct 61 ACGTTGGGC 69 >seq202838 Length=921 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142060 TGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGCCA 142119 |||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||| Sbjct 921 TGGCGCAATGGATAGCGCGTCGGACTTCTAATCCGGAGGTTGCGGGTTCGAGTCCCGCCC 862 Query 142120 GAGACG 142125 | |||| Sbjct 861 GGGACG 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1023670104430718