Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq10312 100 6e-16
seq241888 98.7 2e-15
seq156076 91.5 3e-13
seq35201 91.5 3e-13
seq126173 86.0 1e-11
seq202838 84.2 4e-11
>seq10312
Length=6588
Score = 100 bits (110), Expect = 6e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 907 ATAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCG 966
Query 142561 AGCCCCACATCGGGC 142575
|||||||||||||||
Sbjct 967 AGCCCCACATCGGGC 981
Score = 98.7 bits (108), Expect = 2e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 79 TAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 138
Query 142562 GCCCCACATCGGGC 142575
||||||||||||||
Sbjct 139 GCCCCACATCGGGC 152
>seq241888
Length=741
Score = 98.7 bits (108), Expect = 2e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 276 TAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 335
Query 142562 GCCCCACATCGGGC 142575
||||||||||||||
Sbjct 336 GCCCCACATCGGGC 349
>seq156076
Length=1265
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110
||||| | ||||||||||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct 185 ATGTCCCGGTGGCGCAATGGATAGCGCGTCGGACTTCTAATCCGGAGGTTGCGGGTTCGA 126
Query 142111 CCCCCGCCAGAGACG 142125
|||||| | ||||
Sbjct 125 GTCCCGCCCGGGACG 111
>seq35201
Length=4042
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1639 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1580
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 1579 CCCCACGTTGGGC 1567
>seq126173
Length=1598
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1529 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1588
Query 142564 CCCAC 142568
|||||
Sbjct 1589 CCCAC 1593
Score = 84.2 bits (92), Expect = 4e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566
||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1 CGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 60
Query 142567 ACATCGGGC 142575
|| | ||||
Sbjct 61 ACGTTGGGC 69
>seq202838
Length=921
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142060 TGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGCCA 142119
|||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct 921 TGGCGCAATGGATAGCGCGTCGGACTTCTAATCCGGAGGTTGCGGGTTCGAGTCCCGCCC 862
Query 142120 GAGACG 142125
| ||||
Sbjct 861 GGGACG 856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1023670104430718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |