Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq171037 159 6e-34 seq32333 159 6e-34 seq270304 125 1e-23 >seq171037 Length=1136 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || |||||||| || || || ||||| || Sbjct 787 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 728 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| |||||||| | || || || || || || || |||||||| || |||||| Sbjct 727 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 668 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| | ||| ||| ||| || ||||| |||||| ||| Sbjct 667 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 608 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || ||||| || || || ||||| ||||| |||||| Sbjct 607 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 560 Score = 120 bits (132), Expect = 6e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | || || ||||| || || ||||||||||| | ||| | | |||||| Sbjct 997 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCT 938 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || ||||| || || | || ||| ||||| || ||||| ||||| || ||||| Sbjct 937 AGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGG 878 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || |||| | || | ||||| |||||| |||||||| || || || || Sbjct 877 ATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTG 818 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || |||||||| Sbjct 817 CCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || |||||||| || || || ||||| || Sbjct 3989 CCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGAT 4048 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| |||||||| | || || || || || || || |||||||| || |||||| Sbjct 4049 AGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGA 4108 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| | ||| ||| ||| || ||||| |||||| ||| Sbjct 4109 ATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACT 4168 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || ||||| || || || ||||| ||||| |||||| Sbjct 4169 TCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 Score = 120 bits (132), Expect = 6e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | || || ||||| || || ||||||||||| | ||| | | |||||| Sbjct 3779 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCT 3838 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || ||||| || || | || ||| ||||| || ||||| ||||| || ||||| Sbjct 3839 AGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGG 3898 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || |||| | || | ||||| |||||| |||||||| || || || || Sbjct 3899 ATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTG 3958 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || |||||||| Sbjct 3959 CCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 >seq270304 Length=645 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || || ||||| || ||||| || || Sbjct 78 CCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAA 137 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | |||||| || ||||| || || ||||| || || | ||| Sbjct 138 AGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGA 197 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||||||||| || |||| || | || | ||| ||| Sbjct 198 ATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACT 257 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || |||||||| || | || || || || || ||||| Sbjct 258 TCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917977406448560