Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 131 4e-25
seq32333 131 4e-25
seq270304 100 7e-16
>seq171037
Length=1136
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || | |||||| || || || || | || |||||| || |||||||| ||||
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || | |||||||| ||||||||| || || || | || || || | ||
Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||||||||| |||||||| ||||| | |||||| | | || || ||||| |||
Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || ||||| || |||||||| || || || ||||||||
Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || | |||||| || || || || | || |||||| || |||||||| ||||
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || | |||||||| ||||||||| || || || | || || || | ||
Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||||||||| |||||||| ||||| | |||||| | | || || ||||| |||
Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || ||||| || |||||||| || || || ||||||||
Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
>seq270304
Length=645
Score = 100 bits (110), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || ||||||| || ||| ||||| ||||||||||| |
Sbjct 78 CCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAA 137
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| || || || ||||| | || ||||| ||||| || || | || || ||||
Sbjct 138 AGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTG---ATCTGAG 194
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| ||||| || || || || ||||| ||||| | || || ||| |||
Sbjct 195 GGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCA 254
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || || || || ||||| | || || || || || |||||
Sbjct 255 ACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1174872258747844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |