Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq93010 89.7 6e-13 seq75644 89.7 6e-13 seq110960 84.2 3e-11 >seq93010 Length=2134 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 115069 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 115128 |||||||||||| || | || || || | || || | | ||| | | || || || Sbjct 468 ACCAATACCCCCAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCC 409 Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188 || || |||| |||| ||| || ||| || ||||| ||||| || ||||||||||| Sbjct 408 CTCAATGCTGTCATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGT 349 Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGT 115247 ||||| || ||||| || || | ||||| | ||| || | ||||||| | || Sbjct 348 ACCAGAATTAAAGAGAGTGGGGGAAGCGTGAGTAAAC-CACTTCAAGGACATCAAGTTGT 290 Query 115248 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 115307 |||| || |||| || ||||| || ||||||||| || ||||| | ||| | || Sbjct 289 AGGTTTCACAGACTGCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCA 230 Query 115308 T 115308 | Sbjct 229 T 229 >seq75644 Length=2520 Score = 89.7 bits (98), Expect = 6e-13 Identities = 327/502 (65%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| |||||||| ||||||||||| || || || | |||||||||||| Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 ||||||||| || |||| | |||||||| | | | | |||| || | || | | Sbjct 649 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTATAGCAAGC 707 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | || | || | ||| ||||| | ||| ||||||| || || || || Sbjct 708 GATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTTA 767 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 || | || || | ||| |||| || || |||| || ||| | || || | Sbjct 768 CGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCAT 827 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGC-AAAGTCTTGAAGAGTTCCACGGCAAACTCT 126055 || ||| | || || || | | | | ||||| || ||||| || Sbjct 828 AAACACGTTCCTTATC-GGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAAAGTCG 886 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 ||| || || ||||| || || |||||||| |||| || |||||||| || Sbjct 887 GTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGG 946 Query 126116 CCCCGCTTCTTCAACCAGAAAATCG-CACAAAA-TGAACCCGAGAAGAAGATTCCCTCCA 126173 || |||||||| | ||| || || | | ||||| || || || ||||||| ||| || | Sbjct 947 CCACGCTTCTTAAGCCAAAATATAGACGCAAAACTG--CCGGAAAAGAAGACTCCTTCGA 1004 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGT---CAAACCACT 126230 || || || | |||||| ||||| | |||||||| | ||| ||| | Sbjct 1005 TTGCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGT 1061 Query 126231 TCATCGCCCACTGCGCCTTTTT 126252 | ||||||||||||||||| Sbjct 1062 CAAGGGCCCACTGCGCCTTTTT 1083 >seq110960 Length=1818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 326/502 (65%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| |||||||| |||||||| || || || || | |||||||||||| Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 ||||||||| || |||| | |||||||| | | | | |||| || | || | | Sbjct 1170 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTACAGCAAGC 1112 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | || | || | ||| ||||| | ||| ||||||| || || || || Sbjct 1111 GATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTGA 1052 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 || | || || | ||| |||| || || |||| || ||| | || || | Sbjct 1051 CGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCAT 992 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGC-AAAGTCTTGAAGAGTTCCACGGCAAACTCT 126055 || ||| | || || || | | | | ||||| || ||||| || Sbjct 991 AAACACGTTCCTTATC-GGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAAAGTCG 933 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 ||| || || ||||| || || |||||||| |||| || |||||||| || Sbjct 932 GTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGG 873 Query 126116 CCCCGCTTCTTCAACCAGAAAATCG-CACAAAA-TGAACCCGAGAAGAAGATTCCCTCCA 126173 || |||||||| | ||| || || | | ||||| || || || ||||||| ||| || | Sbjct 872 CCACGCTTCTTAAGCCAAAATATAGACGCAAAACTG--CCGGAAAAGAAGACTCCTTCGA 815 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGT---CAAACCACT 126230 || || || | |||||| ||||| | |||||||| | ||| ||| | Sbjct 814 TTGCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGT 758 Query 126231 TCATCGCCCACTGCGCCTTTTT 126252 | ||||||||||||||||| Sbjct 757 CAAGGGCCCACTGCGCCTTTTT 736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594991081445840