Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq171037 132 5e-26 seq32333 132 5e-26 seq270304 118 1e-21 seq150668 111 2e-19 seq157544 107 2e-18 seq256849 86.0 6e-12 >seq171037 Length=1136 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| || || | || |||||||| ||||| || ||||| | | || || Sbjct 1004 TCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT 945 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| || || || |||||| |||| | || |||||||| || |||||||||||||| Sbjct 944 GTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTT 885 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | |||| ||||| | |||||||| |||| | || ||||| | ||| | Sbjct 884 ATCTTGGA-TTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAA 826 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| |||| |||||| || ||||| ||||| Sbjct 825 TTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||||| || || ||||| ||||| |||||||||| | ||| | | || Sbjct 773 AAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATC 714 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || || ||| |||| |||| || || || || ||||| ||||| || || Sbjct 713 TTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTC 654 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || |||||| ||| | ||| |||| | |||||||| | ||| | || Sbjct 653 TTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGT 594 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 ||| || |||| ||||| || || |||||||||||| Sbjct 593 CTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 >seq32333 Length=4216 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| || || | || |||||||| ||||| || ||||| | | || || Sbjct 3772 TCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT 3831 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| || || || |||||| |||| | || |||||||| || |||||||||||||| Sbjct 3832 GTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTT 3891 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | |||| ||||| | |||||||| |||| | || ||||| | ||| | Sbjct 3892 ATCTTGGA-TTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAA 3950 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| |||| |||||| || ||||| ||||| Sbjct 3951 TTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 >seq270304 Length=645 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||||||||| || ||||| ||||| || || || || | | || || | || Sbjct 92 AAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATC 151 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| || || |||| |||| ||||| || | ||||| ||||| || || Sbjct 152 TTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATC 211 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 |||||| ||| ||| ||| || || |||| | || ||||||| |||| || Sbjct 212 TTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGT 271 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || ||||| || ||||||||||| Sbjct 272 TTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 >seq150668 Length=1318 Score = 111 bits (122), Expect = 2e-19 Identities = 298/445 (67%), Gaps = 23/445 (5%) Strand=Plus/Minus Query 132539 GTATTCGCCCACTCGACGTTCGAAAAAGTTTGTCTTGCCCTCCAGCGATATGTTGTTCAT 132598 ||||||||| || || |||||||| || || ||||||||||| ||||| || | ||| Sbjct 1161 GTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCCAT 1102 Query 132599 GAAATTAAAAGGATTGGGTGTGTTA-AAATGTTTGGGTTGTTGC--AGCTCTGTAAGCAA 132655 |||| ||| ||||| | ||| |||| || |||| | || || | || | Sbjct 1101 AAAATCAAACGGATTTTCGGAGTTCCAAATCTTC---TTGTAACCAAGTTCAGACAGAAG 1045 Query 132656 CCGATCCGCCACAAACTCGATATATTCGCACATG-GCGCGCGAATTCATACCCAACAAAT 132714 ||||| ||||||||||| || || ||||| | |||| ||||||| || | | | Sbjct 1044 ACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGC-AATTCATCCCAATGAGAC 986 Query 132715 CGCAAGGAAGCGCGCTAGTGAAAAACTCTTTTTCAATGTTCACTGCTTCCACGAACATGT 132774 | || | || ||||| ||| |||| ||||| || ||||| ||| | | || Sbjct 985 TGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTAT-- 928 Query 132775 CCAGTATTTCGGCGGATGACATTTTGTCGCGCTCAT-CAAT-ATATTCATTGTAATACAA 132832 || || |||| || | | || | | |||| |||| | | |||| | Sbjct 927 --AGAAT------GGATCCTCTTCTCTTCCGGTTTTGCAATGATATGCTTA--AATAGGA 878 Query 132833 A-CACGCAAAGTTTGTATGCAAACCTTCGTCTCTTGATATAAGCTCGTTGCTGAACGTGA 132891 || || || | ||||| || || |||| ||||||||| |||||||| |||| Sbjct 877 GGCAAGCGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGA 818 Query 132892 GGCCGGGCATGATGCCTTTTGTTTTAATAAAAAATATTGCCGCAAAACTGCCCGAAAAGA 132951 |||||||||| | || |||||| ||||||| || ||||| ||||| || |||| Sbjct 817 GGCCGGGCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGA 758 Query 132952 ACACGCCTTCTACAATTGCAAAAGC 132976 | || ||||||||| ||||||||| Sbjct 757 AAACACCTTCTACAGCTGCAAAAGC 733 >seq157544 Length=1252 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| |||||||||||||| |||| | ||||| | || Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| |||| || |||||||| || || || || || || || || Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| | ||||| | | || || || | || | || Sbjct 1124 TG-AATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGT 1066 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || |||||||| |||||||| Sbjct 1065 CTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033 >seq256849 Length=689 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| |||| | ||||| | || || ||||||||||| Sbjct 612 GTTGATTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGACCATCCTCTAGCTGCTTGCCT 553 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 ||| |||| || ||||||||||| || || || || || || || || || Sbjct 552 GCAAAAATTAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGAAT 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497668717307120