Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 132 5e-26
seq32333 132 5e-26
seq270304 118 1e-21
seq150668 111 2e-19
seq157544 107 2e-18
seq256849 86.0 6e-12
>seq171037
Length=1136
Score = 132 bits (146), Expect = 5e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| ||||| || || | || |||||||| ||||| || ||||| | | || ||
Sbjct 1004 TCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT 945
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
|||||| || || || |||||| |||| | || |||||||| || ||||||||||||||
Sbjct 944 GTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTT 885
Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406
||||| | |||| ||||| | |||||||| |||| | || ||||| | ||| |
Sbjct 884 ATCTTGGA-TTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAA 826
Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| |||| |||||| || ||||| |||||
Sbjct 825 TTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
Score = 131 bits (144), Expect = 2e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| ||||||| || || ||||| ||||| |||||||||| | ||| | | ||
Sbjct 773 AAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATC 714
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| || || || || ||| |||| |||| || || || || ||||| ||||| || ||
Sbjct 713 TTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTC 654
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || || |||||| ||| | ||| |||| | |||||||| | ||| | ||
Sbjct 653 TTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGT 594
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447
||| || |||| ||||| || || ||||||||||||
Sbjct 593 CTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557
>seq32333
Length=4216
Score = 132 bits (146), Expect = 5e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| ||||| || || | || |||||||| ||||| || ||||| | | || ||
Sbjct 3772 TCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT 3831
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
|||||| || || || |||||| |||| | || |||||||| || ||||||||||||||
Sbjct 3832 GTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTT 3891
Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406
||||| | |||| ||||| | |||||||| |||| | || ||||| | ||| |
Sbjct 3892 ATCTTGGA-TTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAA 3950
Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| |||| |||||| || ||||| |||||
Sbjct 3951 TTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
>seq270304
Length=645
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| |||||||||| || ||||| ||||| || || || || | | || || | ||
Sbjct 92 AAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCATC 151
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||||| || || |||| |||| ||||| || | ||||| ||||| || ||
Sbjct 152 TTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTATC 211
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|||||| ||| ||| ||| || || |||| | || ||||||| |||| ||
Sbjct 212 TTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATAGT 271
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| || ||||| || |||||||||||
Sbjct 272 TTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
>seq150668
Length=1318
Score = 111 bits (122), Expect = 2e-19
Identities = 298/445 (67%), Gaps = 23/445 (5%)
Strand=Plus/Minus
Query 132539 GTATTCGCCCACTCGACGTTCGAAAAAGTTTGTCTTGCCCTCCAGCGATATGTTGTTCAT 132598
||||||||| || || |||||||| || || ||||||||||| ||||| || | |||
Sbjct 1161 GTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCCAT 1102
Query 132599 GAAATTAAAAGGATTGGGTGTGTTA-AAATGTTTGGGTTGTTGC--AGCTCTGTAAGCAA 132655
|||| ||| ||||| | ||| |||| || |||| | || || | || |
Sbjct 1101 AAAATCAAACGGATTTTCGGAGTTCCAAATCTTC---TTGTAACCAAGTTCAGACAGAAG 1045
Query 132656 CCGATCCGCCACAAACTCGATATATTCGCACATG-GCGCGCGAATTCATACCCAACAAAT 132714
||||| ||||||||||| || || ||||| | |||| ||||||| || | | |
Sbjct 1044 ACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGC-AATTCATCCCAATGAGAC 986
Query 132715 CGCAAGGAAGCGCGCTAGTGAAAAACTCTTTTTCAATGTTCACTGCTTCCACGAACATGT 132774
| || | || ||||| ||| |||| ||||| || ||||| ||| | | ||
Sbjct 985 TGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTAT-- 928
Query 132775 CCAGTATTTCGGCGGATGACATTTTGTCGCGCTCAT-CAAT-ATATTCATTGTAATACAA 132832
|| || |||| || | | || | | |||| |||| | | |||| |
Sbjct 927 --AGAAT------GGATCCTCTTCTCTTCCGGTTTTGCAATGATATGCTTA--AATAGGA 878
Query 132833 A-CACGCAAAGTTTGTATGCAAACCTTCGTCTCTTGATATAAGCTCGTTGCTGAACGTGA 132891
|| || || | ||||| || || |||| ||||||||| |||||||| ||||
Sbjct 877 GGCAAGCGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGA 818
Query 132892 GGCCGGGCATGATGCCTTTTGTTTTAATAAAAAATATTGCCGCAAAACTGCCCGAAAAGA 132951
|||||||||| | || |||||| ||||||| || ||||| ||||| || ||||
Sbjct 817 GGCCGGGCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGA 758
Query 132952 ACACGCCTTCTACAATTGCAAAAGC 132976
| || ||||||||| |||||||||
Sbjct 757 AAACACCTTCTACAGCTGCAAAAGC 733
>seq157544
Length=1252
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || ||||| |||||||||||||| |||| | ||||| | ||
Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||| ||||| ||| |||| || |||||||| || || || || || || || ||
Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | |||| ||||| ||| ||| | ||||| | | || || || | || | ||
Sbjct 1124 TG-AATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGT 1066
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| || || | || |||||||| ||||||||
Sbjct 1065 CTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033
>seq256849
Length=689
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| |||||||||||||| |||| | ||||| | || || |||||||||||
Sbjct 612 GTTGATTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGACCATCCTCTAGCTGCTTGCCT 553
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356
||| |||| || ||||||||||| || || || || || || || || ||
Sbjct 552 GCAAAAATTAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGAAT 503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 497668717307120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |