Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq110960 152 5e-32
seq75644 143 3e-29
seq157544 105 7e-18
seq171037 100 3e-16
seq32333 100 3e-16
>seq110960
Length=1818
Score = 152 bits (168), Expect = 5e-32
Identities = 342/508 (67%), Gaps = 7/508 (1%)
Strand=Plus/Plus
Query 52332 TGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA-CGCT 52390
|| || | ||||||||| |||||||| | | ||||| | | | ||| | || || |
Sbjct 727 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 785
Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450
|||||||| || | ||||| || | |||| || || || ||||||||||| |||||
Sbjct 786 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 845
Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510
| || |||| |||| | | ||| | ||||| ||| |||| |||||||| || |
Sbjct 846 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 905
Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGT 52570
|| ||||||||||| || ||||| |||||||| ||||| | ||| |||
Sbjct 906 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGT 965
Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGC-ATGTTCAAGGAGGCGGTGGCTATCG 52629
|| |||| ||| ||| ||| | || || ||||||||||| ||| || |
Sbjct 966 GA---AAAAGCCCGATAAGGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAG 1021
Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689
|||||| || |||| | || | || ||| | ||| | ||||||||| | |
Sbjct 1022 AAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGATATGA 1081
Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749
||||| ||| |||| ||||| || ||||| || || |||| || | |||
Sbjct 1082 TGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGAAGA 1141
Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809
| || ||| ||||| ||||| |||||| | || || ||| | |||||||| || |
Sbjct 1142 TTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACGA 1201
Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| || |||||||| || || || ||
Sbjct 1202 ACTTCTTTGAGAAGCGTGTTGGGGAATA 1229
>seq75644
Length=2520
Score = 143 bits (158), Expect = 3e-29
Identities = 340/508 (67%), Gaps = 7/508 (1%)
Strand=Plus/Minus
Query 52332 TGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA-CGCT 52390
|| || | ||||||||| |||||||| | | ||||| | | | ||| | || || |
Sbjct 1092 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 1034
Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450
|||||||| || | ||||| || | |||| || || || ||||||||||| |||||
Sbjct 1033 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 974
Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510
| || |||| |||| | | ||| | ||||| ||| |||| |||||||| || |
Sbjct 973 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 914
Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGT 52570
|| ||||||||||| || ||||| |||||||| ||||| | ||| |||
Sbjct 913 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGT 854
Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGC-ATGTTCAAGGAGGCGGTGGCTATCG 52629
|| |||| ||| ||| ||| | || || ||||||||||| ||| || |
Sbjct 853 GA---AAAAGCCCGATAAGGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAG 798
Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689
|||||| || |||| | || | || || | ||| | ||||||||| | |
Sbjct 797 AAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATGA 738
Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749
||||| ||| |||| ||||| || ||||| || | |||| || | |||
Sbjct 737 TGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGGTTACGAGAAGA 678
Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809
| || ||| ||||| ||||| |||||| | || || ||| | |||||||| || |
Sbjct 677 TTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACAA 618
Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| || |||||||| || || || ||
Sbjct 617 ACTTCTTTGAGAAGCGTGTTGGGGAATA 590
>seq157544
Length=1252
Score = 105 bits (116), Expect = 7e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470
||||| |||| |||||||||||||||||||| || ||| || ||||| || ||
Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177
Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530
||| || | | | ||||||||||| || ||||| || || || || || || ||| |||
Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATC-CTGAATTT 1118
Query 138531 TTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589
| | ||| | | || | || ||| ||||||| ||||||| || | || || ||||
Sbjct 1117 TAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAG 1058
Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614
| || || ||||| || || |||||
Sbjct 1057 TAAGGGTCTTTACGAATATTTGCAT 1033
>seq171037
Length=1136
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || || ||||| || || ||| | ||||| ||| || |||||||| |||| |
Sbjct 982 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 923
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| |||| || || ||||| || || || |||||||| || |||||| ||| |
Sbjct 922 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 863
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| |||||| ||||| | || || || || | || | || || || |||||||||||
Sbjct 862 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 803
Query 138601 ACAAAAATCTGCATG 138615
|||||||||||||||
Sbjct 802 ACAAAAATCTGCATG 788
>seq32333
Length=4216
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || || ||||| || || ||| | ||||| ||| || |||||||| |||| |
Sbjct 3794 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 3853
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| |||| || || ||||| || || || |||||||| || |||||| ||| |
Sbjct 3854 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 3913
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| |||||| ||||| | || || || || | || | || || || |||||||||||
Sbjct 3914 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 3973
Query 138601 ACAAAAATCTGCATG 138615
|||||||||||||||
Sbjct 3974 ACAAAAATCTGCATG 3988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494299694614560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |