Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq110960 152 5e-32 seq75644 143 3e-29 seq157544 105 7e-18 seq171037 100 3e-16 seq32333 100 3e-16 >seq110960 Length=1818 Score = 152 bits (168), Expect = 5e-32 Identities = 342/508 (67%), Gaps = 7/508 (1%) Strand=Plus/Plus Query 52332 TGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA-CGCT 52390 || || | ||||||||| |||||||| | | ||||| | | | ||| | || || | Sbjct 727 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 785 Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450 |||||||| || | ||||| || | |||| || || || ||||||||||| ||||| Sbjct 786 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 845 Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510 | || |||| |||| | | ||| | ||||| ||| |||| |||||||| || | Sbjct 846 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 905 Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGT 52570 || ||||||||||| || ||||| |||||||| ||||| | ||| ||| Sbjct 906 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGT 965 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGC-ATGTTCAAGGAGGCGGTGGCTATCG 52629 || |||| ||| ||| ||| | || || ||||||||||| ||| || | Sbjct 966 GA---AAAAGCCCGATAAGGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAG 1021 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 |||||| || |||| | || | || ||| | ||| | ||||||||| | | Sbjct 1022 AAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGATATGA 1081 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749 ||||| ||| |||| ||||| || ||||| || || |||| || | ||| Sbjct 1082 TGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTACGAGAAGA 1141 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | || ||| ||||| ||||| |||||| | || || ||| | |||||||| || | Sbjct 1142 TTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACGA 1201 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| || |||||||| || || || || Sbjct 1202 ACTTCTTTGAGAAGCGTGTTGGGGAATA 1229 >seq75644 Length=2520 Score = 143 bits (158), Expect = 3e-29 Identities = 340/508 (67%), Gaps = 7/508 (1%) Strand=Plus/Minus Query 52332 TGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA-CGCT 52390 || || | ||||||||| |||||||| | | ||||| | | | ||| | || || | Sbjct 1092 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 1034 Query 52391 GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGC 52450 |||||||| || | ||||| || | |||| || || || ||||||||||| ||||| Sbjct 1033 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 974 Query 52451 CGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTT 52510 | || |||| |||| | | ||| | ||||| ||| |||| |||||||| || | Sbjct 973 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 914 Query 52511 GATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGT 52570 || ||||||||||| || ||||| |||||||| ||||| | ||| ||| Sbjct 913 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTTCAAACATATCGT 854 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGC-ATGTTCAAGGAGGCGGTGGCTATCG 52629 || |||| ||| ||| ||| | || || ||||||||||| ||| || | Sbjct 853 GA---AAAAGCCCGATAAGGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATAG 798 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 |||||| || |||| | || | || || | ||| | ||||||||| | | Sbjct 797 AAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATGA 738 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749 ||||| ||| |||| ||||| || ||||| || | |||| || | ||| Sbjct 737 TGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGGTTACGAGAAGA 678 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | || ||| ||||| ||||| |||||| | || || ||| | |||||||| || | Sbjct 677 TTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAACAA 618 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| || |||||||| || || || || Sbjct 617 ACTTCTTTGAGAAGCGTGTTGGGGAATA 590 >seq157544 Length=1252 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| |||| |||||||||||||||||||| || ||| || ||||| || || Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 ||| || | | | ||||||||||| || ||||| || || || || || || ||| ||| Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATC-CTGAATTT 1118 Query 138531 TTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 | | ||| | | || | || ||| ||||||| ||||||| || | || || |||| Sbjct 1117 TAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAG 1058 Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614 | || || ||||| || || ||||| Sbjct 1057 TAAGGGTCTTTACGAATATTTGCAT 1033 >seq171037 Length=1136 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || ||||| || || ||| | ||||| ||| || |||||||| |||| | Sbjct 982 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 923 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | |||| || || ||||| || || || |||||||| || |||||| ||| | Sbjct 922 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 863 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | |||||| ||||| | || || || || | || | || || || ||||||||||| Sbjct 862 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 803 Query 138601 ACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 802 ACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || ||||| || || ||| | ||||| ||| || |||||||| |||| | Sbjct 3794 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 3853 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | |||| || || ||||| || || || |||||||| || |||||| ||| | Sbjct 3854 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 3913 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | |||||| ||||| | || || || || | || | || || || ||||||||||| Sbjct 3914 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 3973 Query 138601 ACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 3974 ACAAAAATCTGCATG 3988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494299694614560