Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 95.1 9e-15
seq32333 93.3 3e-14
>seq171037
Length=1136
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || ||||| || || |||||||| || | || | ||||| | |||
Sbjct 764 ATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTG 705
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| ||||| | || | | ||||| || |||||| ||||||||||| ||| ||
Sbjct 704 TTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTT 645
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||||| | ||||| || || || ||| || || | ||||| || || || ||
Sbjct 644 CGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGT 585
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGA 15182
||| ||||| ||||| |||||||| || ||
Sbjct 584 CAGTGTTTTGACAAATATTTGCATTTTAGA 555
Score = 87.8 bits (96), Expect = 1e-12
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC--GTCTTCTAATTGTTTGC 15037
||||| ||||| || || || |||||| || ||| || |||||||| |||||| |
Sbjct 985 GTAGATTCTTTCTGAATATTATAATCG--GATAATGTACGACTGTCTTCTAGTTGTTTTC 928
Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097
| || | || || || || ||||| ||||||||||| || || ||||| ||
Sbjct 927 CGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTT 868
Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157
| | |||| | || || || ||| || || || ||||| || || || |||||||
Sbjct 867 TGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAG 808
Query 15158 TTTTTACAAAAATTTGCAT 15176
|||| |||||||| |||||
Sbjct 807 TTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || ||||| || || |||||||| || | || | ||||| | |||
Sbjct 4012 ATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTG 4071
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| ||||| | || | | ||||| || |||||| ||||||||||| ||| ||
Sbjct 4072 TTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTT 4131
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||||| | ||||| || || || ||| || || | ||||| || || || ||
Sbjct 4132 CGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGT 4191
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
||| ||||| ||||| ||||||||
Sbjct 4192 CAGTGTTTTGACAAATATTTGCAT 4215
Score = 87.8 bits (96), Expect = 1e-12
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC--GTCTTCTAATTGTTTGC 15037
||||| ||||| || || || |||||| || ||| || |||||||| |||||| |
Sbjct 3791 GTAGATTCTTTCTGAATATTATAATCG--GATAATGTACGACTGTCTTCTAGTTGTTTTC 3848
Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097
| || | || || || || ||||| ||||||||||| || || ||||| ||
Sbjct 3849 CGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTT 3908
Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157
| | |||| | || || || ||| || || || ||||| || || || |||||||
Sbjct 3909 TGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAG 3968
Query 15158 TTTTTACAAAAATTTGCAT 15176
|||| |||||||| |||||
Sbjct 3969 TTTTAACAAAAATCTGCAT 3987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356013860485430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |