Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 111 1e-19
seq32333 111 1e-19
seq150668 93.3 4e-14
seq157544 84.2 2e-11
>seq171037
Length=1136
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
||||| || | ||||| ||||| |||||||| |||||| | || ||| || ||
Sbjct 998 CACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTC 939
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||| |||||||| || | || ||||| ||||| || || || || || || || ||
Sbjct 938 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 879
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|||||| |||| | ||| || ||||| | |||||||| | || | || ||
Sbjct 878 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 819
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| ||||||||||| |||||||||||||||
Sbjct 818 GCCCGTCAGAGTTTTAACAAAAATCTGCATG 788
>seq32333
Length=4216
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
||||| || | ||||| ||||| |||||||| |||||| | || ||| || ||
Sbjct 3778 CACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTC 3837
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||| |||||||| || | || ||||| ||||| || || || || || || || ||
Sbjct 3838 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 3897
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|||||| |||| | ||| || ||||| | |||||||| | || | || ||
Sbjct 3898 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 3957
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| ||||||||||| |||||||||||||||
Sbjct 3958 GCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988
>seq150668
Length=1318
Score = 93.3 bits (102), Expect = 4e-14
Identities = 279/422 (66%), Gaps = 9/422 (2%)
Strand=Plus/Plus
Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219
|| || || || |||||||| ||||||||||| |||||||||| | |||| ||
Sbjct 745 GTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTTAAAAAGCGTGGT 804
Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279
|||||||||||||||| || ||||| ||||| || |||| || || ||||| |
Sbjct 805 CTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAGGGACTGCATTGC 864
Query 47280 AACTTTGCCTGTCTC-TACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT 47338
| || || || ||| || | | || || | | ||||| ||| | | | |
Sbjct 865 GATTTCGCTTGCCTCCTATTTAAGCA-TATCATTG--CAAAACC-GGAAGAGAAGAGGAT 920
Query 47339 CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCC 47398
| || | | || || || |||||| || ||| || | || ||| ||||
Sbjct 921 CCATTCTATAATGGAGGAGGCAGTAAAAATTGAGCAAGAATTTCTCACTGATGCTTTGCC 980
Query 47399 CG--AATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456
|| | ||| | ||||| |||| | | ||| | ||||| || ||||| ||
Sbjct 981 CGTCAGTCTC-ATTGGGA-TGAATTGCGCTCTTATGTGTCGCTACATAGAGTTTGTGGCT 1038
Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516
|| || || || | | || || ||||||| || |||| ||||| || ||
Sbjct 1039 GATCGTCTTCTGTCTGAACTTGGTTACAAGAAGATTTGGAACTCCGAAAATCCGTTTGAT 1098
Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576
|||||| | || || || || |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1099 TTTATGGAAAATATATCTCTGGAGGGCAAAACCAATTTTTTCGAGAAGCGCGTTGGCGAA 1158
Query 47577 TA 47578
||
Sbjct 1159 TA 1160
>seq157544
Length=1252
Score = 84.2 bits (92), Expect = 2e-11
Identities = 95/126 (75%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969
||||| || || || |||||||| ||||| || || |||||| ||| ||||||||
Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177
Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029
||| || || | || | ||||||||||| || || ||||||||||| ||| ||| |||
Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC-TGAATTT 1118
Query 127030 CTGCTT 127035
||||
Sbjct 1117 TAGCTT 1112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473620206223520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |