Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq171037 111 1e-19 seq32333 111 1e-19 seq150668 93.3 4e-14 seq157544 84.2 2e-11 >seq171037 Length=1136 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||| ||||| |||||||| |||||| | || ||| || || Sbjct 998 CACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTC 939 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||| |||||||| || | || ||||| ||||| || || || || || || || || Sbjct 938 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 879 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | ||| || ||||| | |||||||| | || | || || Sbjct 878 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 819 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||||||||| ||||||||||||||| Sbjct 818 GCCCGTCAGAGTTTTAACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||| ||||| |||||||| |||||| | || ||| || || Sbjct 3778 CACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTC 3837 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||| |||||||| || | || ||||| ||||| || || || || || || || || Sbjct 3838 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 3897 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | ||| || ||||| | |||||||| | || | || || Sbjct 3898 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 3957 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||||||||| ||||||||||||||| Sbjct 3958 GCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988 >seq150668 Length=1318 Score = 93.3 bits (102), Expect = 4e-14 Identities = 279/422 (66%), Gaps = 9/422 (2%) Strand=Plus/Plus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219 || || || || |||||||| ||||||||||| |||||||||| | |||| || Sbjct 745 GTAGAAGGTGTTTTCTTCTCAGGCAGCTTTGCCGCGATATTTTGGCTTAAAAAGCGTGGT 804 Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279 |||||||||||||||| || ||||| ||||| || |||| || || ||||| | Sbjct 805 CTTATGCCCGGCCTCACCTTCAGCAATGAGCTTATAAGTCGAGATGAGGGACTGCATTGC 864 Query 47280 AACTTTGCCTGTCTC-TACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT 47338 | || || || ||| || | | || || | | ||||| ||| | | | | Sbjct 865 GATTTCGCTTGCCTCCTATTTAAGCA-TATCATTG--CAAAACC-GGAAGAGAAGAGGAT 920 Query 47339 CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCC 47398 | || | | || || || |||||| || ||| || | || ||| |||| Sbjct 921 CCATTCTATAATGGAGGAGGCAGTAAAAATTGAGCAAGAATTTCTCACTGATGCTTTGCC 980 Query 47399 CG--AATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 || | ||| | ||||| |||| | | ||| | ||||| || ||||| || Sbjct 981 CGTCAGTCTC-ATTGGGA-TGAATTGCGCTCTTATGTGTCGCTACATAGAGTTTGTGGCT 1038 Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516 || || || || | | || || ||||||| || |||| ||||| || || Sbjct 1039 GATCGTCTTCTGTCTGAACTTGGTTACAAGAAGATTTGGAACTCCGAAAATCCGTTTGAT 1098 Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576 |||||| | || || || || |||||||| ||||| ||||||||||||||||| |||||| Sbjct 1099 TTTATGGAAAATATATCTCTGGAGGGCAAAACCAATTTTTTCGAGAAGCGCGTTGGCGAA 1158 Query 47577 TA 47578 || Sbjct 1159 TA 1160 >seq157544 Length=1252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||||| || || || |||||||| ||||| || || |||||| ||| |||||||| Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 ||| || || | || | ||||||||||| || || ||||||||||| ||| ||| ||| Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC-TGAATTT 1118 Query 127030 CTGCTT 127035 |||| Sbjct 1117 TAGCTT 1112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473620206223520