Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 149 6e-31
seq32333 149 6e-31
seq110960 123 2e-23
seq75644 120 3e-22
seq270304 102 7e-17
seq157544 95.1 1e-14
>seq171037
Length=1136
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| | ||| || | ||| || |||| || ||||| || || ||||||||||||
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | || || | ||||||||| || | || |||||||||||||| || |||
Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||||||||| ||||| |||||| ||| || ||||| || ||||||
Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | ||||| || ||||| || |||||||| |||||||| |||||
Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| | ||| || | ||| || |||| || ||||| || || ||||||||||||
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | || || | ||||||||| || | || |||||||||||||| || |||
Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||||||||| ||||| |||||| ||| || ||||| || ||||||
Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | ||||| || ||||| || |||||||| |||||||| |||||
Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
>seq110960
Length=1818
Score = 123 bits (136), Expect = 2e-23
Identities = 308/461 (67%), Gaps = 25/461 (5%)
Strand=Plus/Minus
Query 138086 GTATTCTCCTACGCGCCGCTCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCAT 138145
|||||| || || ||| |||||| || || ||||| ||||| || || || || |||
Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171
Query 138146 AAAATTAAAAGGATTACTCGCCATA--AAATGCTTTGGCTGATTAAGATCGACAAGCAAA 138203
||||| ||| ||||| ||| ||| |||| | | | | | ||| ||| |||||
Sbjct 1170 AAAATCAAAGGGATT-CTCAGCATTCCAAATCTTCTCG-TAACCAAGCTCGTACAGCAAG 1113
Query 138204 CGATCGGCTACAAATTCAATGTATCGACACATCGATTCGGTGTTCATGCCCAACAAACTG 138263
|||||||| |||||||| | ||| || |||||| || ||||||||| | || ||
Sbjct 1112 CGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTG 1053
Query 138264 CAAGGCAACGCCGTTTTAAAAAATTCCTTTTCAATTTCTACCGCTTCGATAAACATGTCC 138323
|| || ||| ||||| || ||||||| || || | || || | || || |
Sbjct 1052 ACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCA 993
Query 138324 AATATTCGTTCGGACGACAGTTTGTCGTG----TTCGGGA-ATGTACTCATTGTAATACA 138378
| | ||||| || ||| | ||| || |||| ||| || | |
Sbjct 992 TAAACACGTTCC---------TTATCGGGCTTTTTCACGATATGT-----TTG-AACAGA 948
Query 138379 AG-CACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTC 138437
|| || ||||||| |||||| | |||||||||||| |||||||| ||||| || |||
Sbjct 947 AGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTC 888
Query 138438 AGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaa 138497
| || ||||| | ||| |||| | |||| || | ||| |||||||| |||||
Sbjct 887 AAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 828
Query 138498 aaaaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538
|| || ||||||| ||| || || | || ||| ||||
Sbjct 827 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGC 787
>seq75644
Length=2520
Score = 120 bits (132), Expect = 3e-22
Identities = 307/461 (67%), Gaps = 25/461 (5%)
Strand=Plus/Plus
Query 138086 GTATTCTCCTACGCGCCGCTCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCAT 138145
|||||| || || ||| |||||| || || ||||| ||||| || || || || |||
Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648
Query 138146 AAAATTAAAAGGATTACTCGCCATA--AAATGCTTTGGCTGATTAAGATCGACAAGCAAA 138203
||||| ||| ||||| ||| ||| |||| | | | | | ||| ||| |||||
Sbjct 649 AAAATCAAAGGGATT-CTCAGCATTCCAAATCTTCTCG-TAACCAAGCTCGTATAGCAAG 706
Query 138204 CGATCGGCTACAAATTCAATGTATCGACACATCGATTCGGTGTTCATGCCCAACAAACTG 138263
|||||||| |||||||| | ||| || |||||| || ||||||||| | || |
Sbjct 707 CGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTT 766
Query 138264 CAAGGCAACGCCGTTTTAAAAAATTCCTTTTCAATTTCTACCGCTTCGATAAACATGTCC 138323
|| || ||| ||||| || ||||||| || || | || || | || || |
Sbjct 767 ACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCA 826
Query 138324 AATATTCGTTCGGACGACAGTTTGTCGTG----TTCGGGA-ATGTACTCATTGTAATACA 138378
| | ||||| || ||| | ||| || |||| ||| || | |
Sbjct 827 TAAACACGTTCC---------TTATCGGGCTTTTTCACGATATGT-----TTG-AACAGA 871
Query 138379 AG-CACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTC 138437
|| || ||||||| |||||| | |||||||||||| |||||||| ||||| || |||
Sbjct 872 AGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTC 931
Query 138438 AGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaa 138497
| || ||||| | ||| |||| | |||| || | ||| |||||||| |||||
Sbjct 932 AAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 991
Query 138498 aaaaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538
|| || ||||||| ||| || || | || ||| ||||
Sbjct 992 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGC 1032
>seq270304
Length=645
Score = 102 bits (112), Expect = 7e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168
|||| || || || || | | |||||||| || || ||||||||||| |||||||| |
Sbjct 73 TTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGT 132
Query 45169 CGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226
| || || | || ||| || | || ||||| ||| | || | | |||||| ||
Sbjct 133 CA--GAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATC 190
Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGA 45286
| ||||| ||||| |||||||| || ||| || | ||| || || | | |
Sbjct 191 TGAGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGG 250
Query 45287 CTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343
|| ||||| || || | ||||| ||||||| ||||| |||||||||||||||||
Sbjct 251 TTCAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCATCGC 307
>seq157544
Length=1252
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|| ||||| || |||||||||||||| || || || | ||||| | | || ||| |
Sbjct 1241 ACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGT--CTGACAGAGTGCGACCATCCT 1184
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | ||||| ||||| | || | || ||||| ||||| || ||||| || ||||| |
Sbjct 1183 CTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCT 1124
Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
||||||| ||| | |||| || ||| ||||| || ||||| || | || |
Sbjct 1123 GAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCT 1064
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342
| || || || || ||||| || ||||||||||
Sbjct 1063 TTCCAGTAAGGGTCTTTACGAATATTTGCATCG 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450215538644080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |