Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq171037 149 6e-31 seq32333 149 6e-31 seq110960 123 2e-23 seq75644 120 3e-22 seq270304 102 7e-17 seq157544 95.1 1e-14 >seq171037 Length=1136 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| || | ||| || |||| || ||||| || || |||||||||||| Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | ||||||||| || | || |||||||||||||| || ||| Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||||||||| ||||| |||||| ||| || ||||| || |||||| Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||| || |||||||| |||||||| ||||| Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| || | ||| || |||| || ||||| || || |||||||||||| Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | ||||||||| || | || |||||||||||||| || ||| Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||||||||| ||||| |||||| ||| || ||||| || |||||| Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||| || |||||||| |||||||| ||||| Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 >seq110960 Length=1818 Score = 123 bits (136), Expect = 2e-23 Identities = 308/461 (67%), Gaps = 25/461 (5%) Strand=Plus/Minus Query 138086 GTATTCTCCTACGCGCCGCTCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCAT 138145 |||||| || || ||| |||||| || || ||||| ||||| || || || || ||| Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171 Query 138146 AAAATTAAAAGGATTACTCGCCATA--AAATGCTTTGGCTGATTAAGATCGACAAGCAAA 138203 ||||| ||| ||||| ||| ||| |||| | | | | | ||| ||| ||||| Sbjct 1170 AAAATCAAAGGGATT-CTCAGCATTCCAAATCTTCTCG-TAACCAAGCTCGTACAGCAAG 1113 Query 138204 CGATCGGCTACAAATTCAATGTATCGACACATCGATTCGGTGTTCATGCCCAACAAACTG 138263 |||||||| |||||||| | ||| || |||||| || ||||||||| | || || Sbjct 1112 CGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTG 1053 Query 138264 CAAGGCAACGCCGTTTTAAAAAATTCCTTTTCAATTTCTACCGCTTCGATAAACATGTCC 138323 || || ||| ||||| || ||||||| || || | || || | || || | Sbjct 1052 ACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCA 993 Query 138324 AATATTCGTTCGGACGACAGTTTGTCGTG----TTCGGGA-ATGTACTCATTGTAATACA 138378 | | ||||| || ||| | ||| || |||| ||| || | | Sbjct 992 TAAACACGTTCC---------TTATCGGGCTTTTTCACGATATGT-----TTG-AACAGA 948 Query 138379 AG-CACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTC 138437 || || ||||||| |||||| | |||||||||||| |||||||| ||||| || ||| Sbjct 947 AGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTC 888 Query 138438 AGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaa 138497 | || ||||| | ||| |||| | |||| || | ||| |||||||| ||||| Sbjct 887 AAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 828 Query 138498 aaaaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538 || || ||||||| ||| || || | || ||| |||| Sbjct 827 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGC 787 >seq75644 Length=2520 Score = 120 bits (132), Expect = 3e-22 Identities = 307/461 (67%), Gaps = 25/461 (5%) Strand=Plus/Plus Query 138086 GTATTCTCCTACGCGCCGCTCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCAT 138145 |||||| || || ||| |||||| || || ||||| ||||| || || || || ||| Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648 Query 138146 AAAATTAAAAGGATTACTCGCCATA--AAATGCTTTGGCTGATTAAGATCGACAAGCAAA 138203 ||||| ||| ||||| ||| ||| |||| | | | | | ||| ||| ||||| Sbjct 649 AAAATCAAAGGGATT-CTCAGCATTCCAAATCTTCTCG-TAACCAAGCTCGTATAGCAAG 706 Query 138204 CGATCGGCTACAAATTCAATGTATCGACACATCGATTCGGTGTTCATGCCCAACAAACTG 138263 |||||||| |||||||| | ||| || |||||| || ||||||||| | || | Sbjct 707 CGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTT 766 Query 138264 CAAGGCAACGCCGTTTTAAAAAATTCCTTTTCAATTTCTACCGCTTCGATAAACATGTCC 138323 || || ||| ||||| || ||||||| || || | || || | || || | Sbjct 767 ACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCA 826 Query 138324 AATATTCGTTCGGACGACAGTTTGTCGTG----TTCGGGA-ATGTACTCATTGTAATACA 138378 | | ||||| || ||| | ||| || |||| ||| || | | Sbjct 827 TAAACACGTTCC---------TTATCGGGCTTTTTCACGATATGT-----TTG-AACAGA 871 Query 138379 AG-CACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTC 138437 || || ||||||| |||||| | |||||||||||| |||||||| ||||| || ||| Sbjct 872 AGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTC 931 Query 138438 AGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaa 138497 | || ||||| | ||| |||| | |||| || | ||| |||||||| ||||| Sbjct 932 AAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 991 Query 138498 aaaaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538 || || ||||||| ||| || || | || ||| |||| Sbjct 992 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGC 1032 >seq270304 Length=645 Score = 102 bits (112), Expect = 7e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 |||| || || || || | | |||||||| || || ||||||||||| |||||||| | Sbjct 73 TTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGT 132 Query 45169 CGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 | || || | || ||| || | || ||||| ||| | || | | |||||| || Sbjct 133 CA--GAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATC 190 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGA 45286 | ||||| ||||| |||||||| || ||| || | ||| || || | | | Sbjct 191 TGAGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGG 250 Query 45287 CTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || ||||| || || | ||||| ||||||| ||||| ||||||||||||||||| Sbjct 251 TTCAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCATCGC 307 >seq157544 Length=1252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || |||||||||||||| || || || | ||||| | | || ||| | Sbjct 1241 ACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGT--CTGACAGAGTGCGACCATCCT 1184 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||||| ||||| | || | || ||||| ||||| || ||||| || ||||| | Sbjct 1183 CTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCT 1124 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||| | |||| || ||| ||||| || ||||| || | || | Sbjct 1123 GAATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCT 1064 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 | || || || || ||||| || |||||||||| Sbjct 1063 TTCCAGTAAGGGTCTTTACGAATATTTGCATCG 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450215538644080