Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq75644 98.7 1e-15 seq110960 95.1 1e-14 seq93010 86.0 8e-12 >seq75644 Length=2520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 328/501 (65%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || |||||||| ||||||||||| || || |||| |||||||||||| Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 ||||||||| || |||| | |||||||| | | | | |||| || | || | | Sbjct 649 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTATAGCAAGC 707 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | || | || | ||| ||||| | ||| ||||||| || || || || Sbjct 708 GATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTTA 767 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 || | || || | ||| |||| || || |||| || ||| | || || | Sbjct 768 CGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCAT 827 Query 127470 GAATAGTGTCCACCCCAGG-TCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCT 127528 || | ||| | || | | | || | || ||||| || |||||| || Sbjct 828 AAACACGTTCCTTATCGGGCTTTTTCACGATATGT-TTGAACAGAAGGCAAGCAAAGTCG 886 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 ||| || || ||||| || || |||||||| |||| || |||||||| || Sbjct 887 GTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGG 946 Query 127589 CCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 || |||||||| | ||| || || | | ||||| ||| || ||||||| || || | Sbjct 947 CCACGCTTCTTAAGCCAAAATATAGACGCAAAA-CTGCCGGAAAAGAAGACTCCTTCGAT 1005 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTAT---CAAACCACTT 127704 || || || | |||||||||||| | |||||||||| ||| ||| | Sbjct 1006 TGCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGTC 1062 Query 127705 CATCGCCCACTGTGCCTTTTT 127725 | |||||||| |||||||| Sbjct 1063 AAGGGCCCACTGCGCCTTTTT 1083 >seq110960 Length=1818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 327/501 (65%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || |||||||| |||||||| || || || |||| |||||||||||| Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 ||||||||| || |||| | |||||||| | | | | |||| || | || | | Sbjct 1170 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTACAGCAAGC 1112 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | || | || | ||| ||||| | ||| ||||||| || || || || Sbjct 1111 GATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTGA 1052 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 || | || || | ||| |||| || || |||| || ||| | || || | Sbjct 1051 CGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCAT 992 Query 127470 GAATAGTGTCCACCCCAGG-TCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCT 127528 || | ||| | || | | | || | || ||||| || |||||| || Sbjct 991 AAACACGTTCCTTATCGGGCTTTTTCACGATATGT-TTGAACAGAAGGCAAGCAAAGTCG 933 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 ||| || || ||||| || || |||||||| |||| || |||||||| || Sbjct 932 GTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGG 873 Query 127589 CCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 || |||||||| | ||| || || | | ||||| ||| || ||||||| || || | Sbjct 872 CCACGCTTCTTAAGCCAAAATATAGACGCAAAA-CTGCCGGAAAAGAAGACTCCTTCGAT 814 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTAT---CAAACCACTT 127704 || || || | |||||||||||| | |||||||||| ||| ||| | Sbjct 813 TGCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGTC 757 Query 127705 CATCGCCCACTGTGCCTTTTT 127725 | |||||||| |||||||| Sbjct 756 AAGGGCCCACTGCGCCTTTTT 736 >seq93010 Length=2134 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 |||||||||||| || | || || || | || || | | ||| | | || || || Sbjct 468 ACCAATACCCCCAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCC 409 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 || || |||| |||| ||| || || || ||||| ||||| || ||||||||||| Sbjct 408 CTCAATGCTGTCATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGT 349 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGT 117208 ||||| || ||||| || || | ||||| | ||| || | ||||||| | || Sbjct 348 ACCAGAATTAAAGAGAGTGGGGGAAGCGTGAGTAAAC-CACTTCAAGGACATCAAGTTGT 290 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 |||| || |||| | ||||| || ||||||||| |||||||| | ||| | || Sbjct 289 AGGTTTCACAGACTGCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCA 230 Query 117269 T 117269 | Sbjct 229 T 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611080794361680