Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq75644 98.7 1e-15
seq110960 95.1 1e-14
seq93010 86.0 8e-12
>seq75644
Length=2520
Score = 98.7 bits (108), Expect = 1e-15
Identities = 328/501 (65%), Gaps = 12/501 (2%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| ||||| || |||||||| ||||||||||| || || |||| ||||||||||||
Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349
||||||||| || |||| | |||||||| | | | | |||| || | || | |
Sbjct 649 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTATAGCAAGC 707
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
|||| | || | || | ||| ||||| | ||| ||||||| || || || ||
Sbjct 708 GATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTTA 767
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469
|| | || || | ||| |||| || || |||| || ||| | || || |
Sbjct 768 CGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCAT 827
Query 127470 GAATAGTGTCCACCCCAGG-TCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCT 127528
|| | ||| | || | | | || | || ||||| || |||||| ||
Sbjct 828 AAACACGTTCCTTATCGGGCTTTTTCACGATATGT-TTGAACAGAAGGCAAGCAAAGTCG 886
Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588
||| || || ||||| || || |||||||| |||| || |||||||| ||
Sbjct 887 GTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGG 946
Query 127589 CCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
|| |||||||| | ||| || || | | ||||| ||| || ||||||| || || |
Sbjct 947 CCACGCTTCTTAAGCCAAAATATAGACGCAAAA-CTGCCGGAAAAGAAGACTCCTTCGAT 1005
Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTAT---CAAACCACTT 127704
|| || || | |||||||||||| | |||||||||| ||| ||| |
Sbjct 1006 TGCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGTC 1062
Query 127705 CATCGCCCACTGTGCCTTTTT 127725
| |||||||| ||||||||
Sbjct 1063 AAGGGCCCACTGCGCCTTTTT 1083
>seq110960
Length=1818
Score = 95.1 bits (104), Expect = 1e-14
Identities = 327/501 (65%), Gaps = 12/501 (2%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| ||||| || |||||||| |||||||| || || || |||| ||||||||||||
Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349
||||||||| || |||| | |||||||| | | | | |||| || | || | |
Sbjct 1170 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTACAGCAAGC 1112
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
|||| | || | || | ||| ||||| | ||| ||||||| || || || ||
Sbjct 1111 GATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTGA 1052
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469
|| | || || | ||| |||| || || |||| || ||| | || || |
Sbjct 1051 CGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCAT 992
Query 127470 GAATAGTGTCCACCCCAGG-TCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCT 127528
|| | ||| | || | | | || | || ||||| || |||||| ||
Sbjct 991 AAACACGTTCCTTATCGGGCTTTTTCACGATATGT-TTGAACAGAAGGCAAGCAAAGTCG 933
Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588
||| || || ||||| || || |||||||| |||| || |||||||| ||
Sbjct 932 GTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGG 873
Query 127589 CCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
|| |||||||| | ||| || || | | ||||| ||| || ||||||| || || |
Sbjct 872 CCACGCTTCTTAAGCCAAAATATAGACGCAAAA-CTGCCGGAAAAGAAGACTCCTTCGAT 814
Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTAT---CAAACCACTT 127704
|| || || | |||||||||||| | |||||||||| ||| ||| |
Sbjct 813 TGCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGTC 757
Query 127705 CATCGCCCACTGTGCCTTTTT 127725
| |||||||| ||||||||
Sbjct 756 AAGGGCCCACTGCGCCTTTTT 736
>seq93010
Length=2134
Score = 86.0 bits (94), Expect = 8e-12
Identities = 165/241 (68%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089
|||||||||||| || | || || || | || || | | ||| | | || || ||
Sbjct 468 ACCAATACCCCCAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCC 409
Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149
|| || |||| |||| ||| || || || ||||| ||||| || |||||||||||
Sbjct 408 CTCAATGCTGTCATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGT 349
Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGT 117208
||||| || ||||| || || | ||||| | ||| || | ||||||| | ||
Sbjct 348 ACCAGAATTAAAGAGAGTGGGGGAAGCGTGAGTAAAC-CACTTCAAGGACATCAAGTTGT 290
Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268
|||| || |||| | ||||| || ||||||||| |||||||| | ||| | ||
Sbjct 289 AGGTTTCACAGACTGCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCA 230
Query 117269 T 117269
|
Sbjct 229 T 229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611080794361680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |