Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq270304 105 2e-17 seq256849 102 2e-16 seq157544 96.9 8e-15 >seq270304 Length=645 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || ||||| || |||||||| | || ||||||| | || Sbjct 84 CGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTA 143 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| ||||| || || | ||||| || | ||| ||| Sbjct 144 CGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCT 203 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || |||||| |||||| |||||| || | ||| | ||| || || | Sbjct 204 TCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGG 263 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||||| ||||||||||| Sbjct 264 GTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTG 301 >seq256849 Length=689 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| || |||||||| | ||||||||| | |||||| | ||||| Sbjct 627 AGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGACCATCC 568 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || || || |||||||||||||| || Sbjct 567 TCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGG 527 >seq157544 Length=1252 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||| || |||||||| | ||||||||| | || ||| | ||||| Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || || || || ||||||||||| ||||| || || || ||| Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || ||||| || | || || | | || || || | ||||| || Sbjct 1124 TGAAT-TTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGT 1066 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || || ||||| Sbjct 1065 CTTTCCAGTAAGGGTCTTTACGAATATTTG 1036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174142429408666