Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq171037 100 3e-16 seq32333 100 3e-16 >seq171037 Length=1136 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| || | | | |||||| ||||| ||| || || || ||||| || ||||| Sbjct 1016 GCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGA 957 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || ||| || || || || ||||| || || || || |||||||| | || Sbjct 956 TAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGG 897 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | || || || ||| || |||| | |||| ||||| || ||||| || Sbjct 896 AATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGAC 837 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||||||||| ||||||||||| || ||||| Sbjct 836 TTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| || | | | |||||| ||||| ||| || || || ||||| || ||||| Sbjct 3760 GCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGA 3819 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || ||| || || || || ||||| || || || || |||||||| | || Sbjct 3820 TAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGG 3879 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | || || || ||| || |||| | |||| ||||| || ||||| || Sbjct 3880 AATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGAC 3939 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||||||||| ||||||||||| || ||||| Sbjct 3940 TTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563002896258960