Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq171037 114 9e-21 seq32333 114 9e-21 >seq171037 Length=1136 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||| |||||||| |||||| || ||||||||||||| || || || Sbjct 1000 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 941 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | |||||| ||| |||||||||| || ||||| || | ||| | |||||||| || Sbjct 940 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 881 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| || | | |||||||| ||| || |||||||||||||| Sbjct 880 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 821 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| | |||||| || || ||||||||| Sbjct 820 TTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||| |||||||| |||||| || ||||||||||||| || || || Sbjct 3776 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 3835 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | |||||| ||| |||||||||| || ||||| || | ||| | |||||||| || Sbjct 3836 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 3895 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| || | | |||||||| ||| || |||||||||||||| Sbjct 3896 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 3955 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| | |||||| || || ||||||||| Sbjct 3956 TTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346030107868334