Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq75644 208 8e-49 seq110960 197 1e-45 seq150668 147 2e-30 seq157544 109 5e-19 >seq75644 Length=2520 Score = 208 bits (230), Expect = 8e-49 Identities = 441/657 (67%), Gaps = 41/657 (6%) Strand=Plus/Plus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 || ||| | ||| ||||||| | ||||||||||||| || | ||| ||||| | Sbjct 850 TTTCACGATATGTTTGAACAGAAGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACT 909 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 ||| ||||| |||||||| |||||||| ||||| ||||| || || || ||||||||||| Sbjct 910 AATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATAT 969 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || |||||||| ||||||||||| || |||| || || || || | | ||||| Sbjct 970 AGACGCAAAACTGCCGGAAAAGAAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTC 1029 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGAC 133109 | | ||||| | | | | | |||||| || ||||| | ||||||| | || Sbjct 1030 GGCAAACGTTGACTTTGTATCACCAATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTAC 1089 Query 133110 GCACGGCATCG----TTTCGATGGCGTTCAACAA--------------ACGGAGTTT--- 133148 || |||| || |||||| || ||||| || || || Sbjct 1090 ACA----ATCGAGGTTTGTGATGGCATTAAACAAGAAATCTCTAAGAAACTTAGATTTAA 1145 Query 133149 ---------CTCTTCCGAGGAA---CGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 || |||| | | || | || || || || || ||||||| || Sbjct 1146 AAATACATACTTTTCCACTGGATCTCGGATATATGTATCAATCAGAAGACAATACATCTC 1205 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 |||||| | || || || || || || | |||||||||||| || ||||| || || Sbjct 1206 CGAGTGAATATTTTCTATTGCCATCTGCATGCCGTAAAAGCATCGGACCTCGGGTACTTG 1265 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 ||||||||| || || || ||||||||||| || || || || ||||| ||||| Sbjct 1266 AACTTCTTGACTAAACCGTTCCACCAGATTTTCCAGCACAATTCCATCACTGGCAGCGAA 1325 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-TCCCAGTCGC 133375 || || || |||| | || ||||| ||||| | | | | ||| || ||||| | || Sbjct 1326 GAAAGCGAGAACGTACGATATAAAATGTCGCTC-TCCTGGCTTAAGTGCATCCCA-TTGC 1383 Query 133376 GC-GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 | |||| ||||||| || ||||| || || | ||| || || || | || |||||| Sbjct 1384 ACAATGTCTTTGGACAAATCAACCTCTTCAACTGACCAGAATGAAGCAACAGCCTTTTTG 1443 Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 || | ||| || |||| |||||| || || || ||||||||||| || |||||| Sbjct 1444 TAAAATTGCCAGATATCCGGATATTGGATTGGCAATATCACAAACCGACGAGGGTTT 1500 >seq110960 Length=1818 Score = 197 bits (218), Expect = 1e-45 Identities = 440/657 (67%), Gaps = 40/657 (6%) Strand=Plus/Minus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 || ||| | ||| ||||||| | ||||||||||||| || | ||| ||||| | Sbjct 969 TTTCACGATATGTTTGAACAGAAGGCAAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACT 910 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 ||| ||||| |||||||| |||||||| ||||| ||||| || || || ||||||||||| Sbjct 909 AATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTCTTAAGCCAAAATAT 850 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || |||||||| ||||||||||| || |||| || || || || | | ||||| Sbjct 849 AGACGCAAAACTGCCGGAAAAGAAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTC 790 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGAC 133109 | | ||||| | | | | | |||||| || ||||| | ||||||| | || Sbjct 789 GGCAAACGTTGACTTTGTATCACCAATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTAC 730 Query 133110 GCA--CG-GCATCGTTTCGATGGCGTTCAACAA---------------ACGGAGTTT--- 133148 || || | |||| |||||| || ||||| || || || Sbjct 729 ACAATCGAGGTTCGT---GATGGCATTAAACAAGAAATCTCTAAGAAAACTTAGATTTAA 673 Query 133149 ---------CTCTTCCGAGGAA---CGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 || |||| | | || | || || || || || ||||||| || Sbjct 672 AAATACATACTTTTCCACTGGATCTCGGATATACGTATCAATCAGAAGACAATACATCTC 613 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||| || | || || || || || || | |||||||||||| || ||||| || || Sbjct 612 CGAATGAATATTTTCTATTGCCATCTGCATGCCGTAAAAGCATCGGACCTCGGGTACTTG 553 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 ||||||||| || || || ||||||||||| || || || || ||||| ||||| Sbjct 552 AACTTCTTGACTAAACCGTTCCACCAGATTTTCCAGCACAATTCCATCACTGGCAGCGAA 493 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-TCCCAGTCGC 133375 || || || |||| | || ||||| ||||| | | | | ||| || ||||| | || Sbjct 492 GAAAGCGAGAACGTACGATATAAAATGTCGCTC-TCCTGGCTTAAGTGCATCCCA-TTGC 435 Query 133376 GC-GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 | |||| ||||||| || ||||| || || | ||| || || || | || |||||| Sbjct 434 ACAATGTCTTTGGACAAATCAACCTCTTCAACTGACCAGAATGAAGCGACAGCCTTTTTG 375 Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 || | ||| || |||| |||||| || || || ||||| ||||| || |||||| Sbjct 374 TAAAATTGCCAGATATCCGGATATTGGATTGGCAATATCACGAACCGACGAGGGTTT 318 >seq150668 Length=1318 Score = 147 bits (162), Expect = 2e-30 Identities = 433/660 (66%), Gaps = 48/660 (7%) Strand=Plus/Minus Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 |||||| || | | |||||| || |||||||||| ||||| || | || || || Sbjct 891 ATGCTTAAATAGGAGGCAAGCGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTC 832 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 |||||||| || | ||||||||| || || || ||||| ||||||||||| ||||| || Sbjct 831 ATTGCTGAAGGTGAGGCCGGGCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAA 772 Query 132999 ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT 133058 ||||| || ||||| || || || || || || ||||| | | || || ||| | Sbjct 771 GCTGCCTGAGAAGAAAACACCTTCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAA--T 714 Query 133059 GGCTTCTTTG---CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || |||| || | |||||| || ||||||| ||||||| | |||||||| Sbjct 713 GGAGAATTTGTATCT-CCAATCCAGTCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTC 655 Query 133116 CATCGTTTCGATGGCGTT------------------CAACAAA---------CGGAGTTT 133148 || | |||| || || ||||||| | | || Sbjct 654 CAAGTTGCCGATTGCATTAAGCAAAAAGTCCCTACACAACAAAAGATATATGCCAACTTA 595 Query 133149 CTCTTCCGAGGAA---CGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTAC 133205 || ||| ||| | | ||| || || || || || |||||||| || |||| Sbjct 594 CTTTTCAACAGAATCTCTGATGTAAGTATCAATAAGAAGAGAGTACATTTCAGAATGTAT 535 Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 ||||| || |||||||| | ||| ||||| || || | || | ||| |||||||| Sbjct 534 ATTCTCAATAGCGATTTGTATGCCATAAAAACAGCGAACTTCTGGGATCTGAACTTCTTG 475 Query 133266 AGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCA 133324 || ||| ||||||| |||||||| || || || || || || |||||||| || | Sbjct 474 -GCTAAACCGCTCGATAAGATTTTCCAAAACTATCCCATCACTAGCAGCGAAAAATGCAA 416 Query 133325 GCACGTGCTTGAT-GAAATGGCGCTCGTTGTC---GTTCAAGCG-CTCCCAGTCGCGCGT 133379 | |||| ||| |||| ||| ||| | || | | ||| | | ||| | | Sbjct 415 GAACGT--AAGATAGAAA--GCG-TCGCTCTCCCGGCTTAAGTGAATTCCAATGAGGAAA 361 Query 133380 GTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| || |||| || || ||||| || ||||| || || ||| | ||||| || || | Sbjct 360 GTCTTTAGACAAATCAACTTCCTCTACTGTCCAGAAGGAAGCCACAGCTTTCTTATAGAA 301 Query 133440 ACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAA 133499 |||| ||||| | ||| | |||||||| || ||||| || | || || |||||| Sbjct 300 TTTCCAAATGTCAGGATACTCAATGGGAAACATTACAAAGCGCCTTGGATTGGGGCGCAA 241 >seq157544 Length=1252 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 ||||| ||||||||||||||||| || || || || || || ||||| |||| || || Sbjct 1026 TAAAACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGA 1085 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | | ||| | | | | | |||| ||||| | || || ||||| || || | Sbjct 1086 GTCGAGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACC 1145 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| || |||| || ||||||||||| || || | ||||| || || Sbjct 1146 GGATCAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGA 1205 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||||||| | || || ||| | || || ||| Sbjct 1206 CTACAACATTCAAAAGGAATCAACTCTACATCTTGTCCTCCGT 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498194629080320