Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq133394 178 5e-39 seq140775 158 5e-33 seq171037 131 7e-25 seq32333 131 7e-25 seq90801 129 2e-24 seq270304 102 3e-16 >seq133394 Length=1506 Score = 178 bits (196), Expect = 5e-39 Identities = 240/333 (72%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||||||||| || ||| | ||| |||| || ||| | ||||| |||||| Sbjct 1506 AAGATGAAAGAAACCGCTGAAAACTATCTTGGAGAAAAGGTAACTCAAGCAGTTATTACT 1447 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || |||||||| |||||||| ||||| ||||||||||| || || ||| | ||||| Sbjct 1446 GTACCAGCTTATTTTAATGATGCTCAACGTCAAGCAACTAAGGACGCTGGAAAAATTGCC 1387 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 |||||| | || | ||||||| |||||||| ||||| ||||| |||||||||| | Sbjct 1386 GGTTTAGAAGTATTAAGAATTATCAATGAACCAACAGCTGCTGCATTAGCATATGGTTTT 1327 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||| | || | |||| |||| | |||| |||||| |||||||| || Sbjct 1326 GATAAAGCTGAA-------AGTAAAATAATAGCT--GTATATGATTTAGGTGGAGGTACA 1276 Query 451514 CATGATACTTCTGTACTTTCA---ATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| | || | ||| | |||| ||||||||||||| || || | |||||| Sbjct 1275 TTTGACATATC---AATTTTAGAGATTGGTAATGGGGTATTTGAGGTCAAATCTACCAAT 1219 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||| |||| |||||||| |||||| ||||| Sbjct 1218 GGTAATACGTTCCTAGGAGGAGAAGATTTTGAT 1186 >seq140775 Length=1422 Score = 158 bits (174), Expect = 5e-33 Identities = 259/372 (70%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 451226 GAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAA 451285 || || || ||||||||||| ||||| || || | ||||||||| ||| |||||||| Sbjct 395 GAGACCAAGACTTTTGCTCCAGAAGAGATATCCGCCATGGTTCTTGGTAAGATGAAAGAC 454 Query 451286 ACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTAT 451345 | || ||| || |||| ||| || | || ||| ||||||| || || || Sbjct 455 ATTGCTGAAGCCTACCTTGGAAAGAAAGTGACACACGCCGTAGTTACTGTCCCTGCGTAC 514 Query 451346 TTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTT 451405 ||||| ||||| ||||| || || || || || || || ||| | ||| | || ||| Sbjct 515 TTCAACGATGCTCAACGCCAGGCTACCAAGGACGCTGGCGTCATTTCCGGTCTTAACGTT 574 Query 451406 CTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAA 451465 | |||||||| ||||| ||||| || || || |||||||||| |||| || |||| Sbjct 575 TTGCGAATTATCAATGAGCCTACTGCCGCAGCCATAGCATATGGTCTAG----ATAAAAA 630 Query 451466 GAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCT 451525 | | | |||| || || || || |||||| | ||||| || ||| ||| ||| Sbjct 631 GGATGGGGAGAAGAACATCCTT--GTCTTTGATCTAGGTGGTGGTACTTTTGACGTATCT 688 Query 451526 GTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTA 451585 | ||| | ||||| |||| || || || || || || | |||||| || ||||| Sbjct 689 CTCCTTACTATTGACAATGGTGTTTTCGAGGTGGTTGCTACTAGTGGTGACACCCATCTT 748 Query 451586 GGAGGTGAAGAT 451597 || ||||||||| Sbjct 749 GGCGGTGAAGAT 760 >seq171037 Length=1136 Score = 131 bits (144), Expect = 7e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 391046 TATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATC 391105 || |||| | || || || |||||||||||||| || || ||||||||||| || ||||| Sbjct 557 TAAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATC 616 Query 391106 ATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGA 391165 | ||| | || || | || || |||||||| |||||||| ||||| ||||| Sbjct 617 AAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGA 676 Query 391166 TCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225 ||||||| | | ||||| | || |||||||| |||||||| || || | | ||||| Sbjct 677 TCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTA 736 Query 391226 TAATATTGATAAGGATGCAACACTTCA 391252 |||||| | || || |||| ||||| Sbjct 737 CAATATTCAGAAAGAGTCAACTCTTCA 763 Score = 131 bits (144), Expect = 7e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| ||||| || || || |||||| | || || |||||| | Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | | ||| || ||| ||||| |||||||| ||||||||||| ||||| || Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| |||||||| | || |||||||| ||||| | | || || | ||||||||| Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 968 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || | || | ||| | || ||||||| || ||| Sbjct 969 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGA 1013 >seq32333 Length=4216 Score = 131 bits (144), Expect = 7e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| ||||| || || || |||||| | || || |||||| | Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | | ||| || ||| ||||| |||||||| ||||||||||| ||||| || Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| |||||||| | || |||||||| ||||| | | || || | ||||||||| Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAAT 3808 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || | || | ||| | || ||||||| || ||| Sbjct 3807 ATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGA 3763 Score = 129 bits (142), Expect = 2e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || |||||||||||||| || || ||||||||||| || |||||| Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || || | || || |||||||| |||||||| ||||| |||||||| Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | | ||||| | || |||||||| |||||||| || || | | ||||| || Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 |||| | || || |||| ||||| Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCA 4013 >seq90801 Length=2179 Score = 129 bits (142), Expect = 2e-24 Identities = 248/361 (69%), Gaps = 5/361 (1%) Strand=Plus/Plus Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 ||| ||||| || || || ||||| | || ||||||||||| || || ||| ||| | Sbjct 1506 TCCCGAAGAGATATCCTCCATGGTGTTAACAAAAATGAAAGAGACGGCCGAAGCCTATTT 1565 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | || | || ||||| ||||| || || |||||||||| |||| ||||| Sbjct 1566 AGGAGTAACTGTCTCGGAGGCAGTGATTACAGTGCCTGCTTATTTCAGTGATAGCCAACG 1625 Query 451363 GCAAGCAACTAAAGATGCAGGACAT-ATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 || || || || ||||| || ||| || ||||| | || ||||| || ||||| |||| Sbjct 1626 TCAGGCGACCAAGGATGCCGG-CATCATCGCTGGACTTAACGTTCTGCGCATTATAAATG 1684 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 | || || || || || | |||||||| || | ||| || | || ||| || Sbjct 1685 AGCCGACTGCCGCCGCCATCGCATATGGTCTCGACAAA--AACATCAA-AGATGAGCGCG 1741 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | | | || |||||||| ||||| || || |||| ||||| ||| || ||| Sbjct 1742 TTGTCCTCGTCTTTGATTTAGGTGGGGGGACCTTTGATGTATCTGTTCTTGTTATAGAAA 1801 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| |||||||||| | || || || |||||| ||||| |||||||| ||| Sbjct 1802 ATGGCATATTTGAAGTGTATGCGACTGCCGGAGATACTAGGCTAGGCGGTGAAGACTTTG 1861 Query 451602 A 451602 | Sbjct 1862 A 1862 >seq270304 Length=645 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||||||| | || || |||||||| || || || |||||| | | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 ||| | ||| | | || ||| || |||||||||||||| ||||| | ||||| Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | || || || ||||||||||| | || | | || |||||| Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || ||||| |||| Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1967709135198984