Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq133394 140 2e-27
seq52071 118 8e-21
seq237940 91.5 1e-12
seq144730 91.5 1e-12
seq92447 89.7 4e-12
>seq133394
Length=1506
Score = 140 bits (154), Expect = 2e-27
Identities = 128/162 (79%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226
|||||||| |||||| || || |||||||| ||||||||||| |||||||| || || |
Sbjct 1321 TTTATCAAAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTC 1380
Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286
| ||| |||||| |||| || || ||||| ||||| | ||| | ||| |||||||| ||
Sbjct 1381 TAAACCGGCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGC 1440
Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328
|| ||||||||||| || | |||||| | || |||| |||
Sbjct 1441 TGGTACAGTAATAACTGCTTGAGTTACCTTTTCTCCAAGATA 1482
Score = 114 bits (126), Expect = 1e-19
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300
||||| ||||| | || || || ||||||||||| || ||| | | || ||||||||
Sbjct 1328 AAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTCTAAACCG 1387
Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360
|||||||| ||| || ||||||||| | || || ||||||||||| |||||||||
Sbjct 1388 GCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGCTGGTACA 1447
Query 322361 GTAATAACTGCTT 322373
|||||||||||||
Sbjct 1448 GTAATAACTGCTT 1460
>seq52071
Length=3253
Score = 118 bits (130), Expect = 8e-21
Identities = 654/1033 (63%), Gaps = 24/1033 (2%)
Strand=Plus/Minus
Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752
||| || ||||||| || || || |||| |||||| || || || |||||||| ||
Sbjct 3210 CTTGGGGATACGAGTAGAGCCACCGACTAGTACAATATCGTGAACGGCGGATTTATCGAG 3151
Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAAC 517811
|||| ||| ||| ||||| || || || ||| ||| | || | || | |
Sbjct 3150 CTTTGCATCGCGTAAGGACTTTTCGACCGGATCCAGAGT-GCTGCGGAAGAGATCGGCAT 3092
Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 517871
|| || ||||| |||||| || | || | | | | || || || ||| | | |
Sbjct 3091 TCAGCTCCTCGAACCTAGCTCGGGTGACAGAGGTGTAAAAGTCTATGCCGTCGTAGAGGG 3032
Query 517872 AATCAACTTCAATCGTAG---TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928
|||||| |||| ||| | | | | | || || ||| | | ||||| |||||||
Sbjct 3031 AATCAATCTCAA-CGTTGGCCTGCGCGCTGGAGCTGAGAGTCCTC--TTAGCTCGTTCAC 2975
Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTT 517986
| || ||||| || | ||| | ||| ||| || | | | || | || || ||
Sbjct 2974 AAGCCGTCCTAAGACGTCGGACTGCTC--GCTTGTTATCAGTGATGTCCTTCTTGTACTT 2917
Query 517987 TCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCC 518044
|| |||||| |||| ||| | ||| | || | | ||| ||||| || ||||| ||
Sbjct 2916 TCGCTTGAACTCTTGTACAAA--ATGATTGACCATTCTATTGTCAAAGTCCTCACCGCCG 2859
Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104
| | || | || | ||| | | || | ||| | ||||| || | | ||| |
Sbjct 2858 AGATGGGTGTCACCGGCCGTGGACTTGACCTCGAAGATACCATCCTCGATTGTCAATATG 2799
Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 518164
| ||||| ||| ||||| || | |||||| || | || || || ||
Sbjct 2798 GAGACATCGAAGGTGCCACCGCCAAGATCAAAGATCAAGACGTTACGCTCACAACCTATC 2739
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || || | || || |||| |||||| || || ||||| || || || || | |||
Sbjct 2738 TTCTTGTCTAAGCCGTAGGCAATAGCAGCGGCCGTAGGTTCGTTGATTATCCTGAGTACA 2679
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||| ||||| | || ||||| ||||| ||||| | || ||||| || ||
Sbjct 2678 TTCAGACCGGCAATCGTACCAGCATCCTTAGTAGCTTGACGCTGACTGTCGTTGAAGTAG 2619
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342
|| |||||||| | ||| || || || || || || | ||| ||||| || ||||
Sbjct 2618 GCCGGAACAGTGACAACAGCGTCGGTGACAGTCTTGCCGAGATA--CGCTTCCGCGGTTT 2561
Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG--GAATATTGCTTGGATTC 518400
||||| || | | || ||| || || |||| ||| || ||| || | | |
Sbjct 2560 CCTTCATCTTGATGAGAACCATGGAAGAGATTTCTTCGGGATAGAAGGTTTTATCGGCGC 2501
Query 518401 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 518460
| ||| || | | | || || || | ||| || | || | |||
Sbjct 2500 CCCT--ATAGTTAACCTTGATCTTCGGCTTCCCTCCTTCGCTAACGACGGTGAAGGACCA 2443
Query 518461 GTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 518520
| ||||| || || || || | || ||| || ||||| || || ||
Sbjct 2442 ATGCTTCATGTCGTCCTGGACGGGAGCATCCTCGAACCGTCTGCCTATTAAGCGCTTGGC 2383
Query 518521 ATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 518580
|| || | ||||||| | || || || || | |||| || || ||||| || || ||
Sbjct 2382 GTCGAAGACAGTATTGCTAGGGTTCATGGCGACCTGATTCTTTGCAGCATCACCGATTAG 2323
Query 518581 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 518640
|||| || || ||||| | ||||| ||||| || | || ||||||||||| ||
Sbjct 2322 GCGTTCGGTGTCAGTAAAGGCGACATAGCTAGGAGTGGTCCTGTTGCCTTGATCATTTGC 2263
Query 518641 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 518700
||||||||||| || |||| || ||||||| ||||| | || || || | ||
Sbjct 2262 GATAATTTCAACCTTGCCATGCTGGAATACACCAACACATGAGTAGGTAGTGCCGAGGTC 2203
Query 518701 AATACCAATAGCA 518713
||| |||||||||
Sbjct 2202 AATGCCAATAGCA 2190
>seq237940
Length=756
Score = 91.5 bits (100), Expect = 1e-12
Identities = 184/271 (68%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 518503
|| || | ||| ||||||| ||||| ||| |||| | ||| | || |||
Sbjct 337 ATCACCTCAAACGGCCAGTGCTTCATGTCTTCACGAACCGTCGTGTCGTCGAACCTTCTG 396
Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563
|| || | || || ||||| || | ||||| || ||||| ||||| | |||| |||
Sbjct 397 CCGATCAGGCGCTTCGCATCGAACACCGTATTCGTCGGATTCATTGCCACCTGATTCTTG 456
Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 518623
|| ||||| ||||||||| | ||||| || || || | || || || ||||| ||
Sbjct 457 GCCGCATCGCCAATCAGACGCTCTGTATCCGTGAAGGCCACGTAACTCGGCGTTGTACGG 516
Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC--TACACAAC 518681
|| || ||||||||||| || || ||||| || || | || | ||||| | ||| |
Sbjct 517 TTTCCCTGATCATTCGCGATGATCTCAACCTTGCCGTGCTGGAAGACACCGGTGCACGAG 576
Query 518682 TAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
| | || || || || || ||||| || ||
Sbjct 577 T--ACGTCGTGCCCAAGTCGATACCGATGGC 605
>seq144730
Length=1378
Score = 91.5 bits (100), Expect = 1e-12
Identities = 122/166 (73%), Gaps = 8/166 (5%)
Strand=Plus/Plus
Query 870812 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 870871
||||| ||||||||||||||||| |||||| ||||||| ||||||||||| || ||||||
Sbjct 653 TCTTCCCCAAATATTGCTAAAGAGATGCATGTTGGACACTTAAGATCAACCATAATTGGT 712
Query 870872 GAATCTATTTGTAG-GGTATTAGAAATGTGT---GGACACGATGTTTATCGTATTAATCA 870927
|| || | ||| |||| || | || || |||| | |||| ||
Sbjct 713 GA---TA-GTCTAGCCCGATTACTTTCGTTTTTGGGGCATTCTGTTACTAAATTTAACCA 768
Query 870928 TGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATT 870973
| | ||||||||||| ||||||||||| ||| | |||||| || ||
Sbjct 769 TATTGGTGATTGGGGTACTCAATTCGGGATGCTTATTGCTCATCTT 814
>seq92447
Length=2146
Score = 89.7 bits (98), Expect = 4e-12
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 635396 AAATTATATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTG 635455
|||||| | |||| | |||| || || ||| | | ||| ||| || |||| |
Sbjct 315 AAATTAGAAGATGCCAATGAGGCTGGGACAAAAAACTCAAATAGATGCACTTTAATACTT 256
Query 635456 ACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGAT 635515
|| || || |||||||||||| | || ||| || | || | ||| | || ||||||
Sbjct 255 ACCGAAGGTGATTCAGCTAAATCTTTGGCTGTGGCAGGATTGGGTGTCGTCGGGAGAGAT 196
Query 635516 TATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaa 635575
||||| ||||||||||| || || |||||| | | || ||||| ||||| | ||
Sbjct 195 TATTACGGAGTTTTCCCTCTGAGGGGAAAATTGCTCAACGTTAGAGATGCAACAAATAGG 136
Query 635576 aaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAA 635629
|| ||| || |||| ||||| | || | | ||||||| |||| ||| ||
Sbjct 135 CAACTTGTAGACAATGCTGAAATAAATGCCCTGATAAAAATTATTGGCCTTCAA 82
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3765121689024988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |