Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq133394 140 2e-27 seq52071 118 8e-21 seq237940 91.5 1e-12 seq144730 91.5 1e-12 seq92447 89.7 4e-12 >seq133394 Length=1506 Score = 140 bits (154), Expect = 2e-27 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||||| |||||| || || |||||||| ||||||||||| |||||||| || || | Sbjct 1321 TTTATCAAAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTC 1380 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 | ||| |||||| |||| || || ||||| ||||| | ||| | ||| |||||||| || Sbjct 1381 TAAACCGGCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGC 1440 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || ||||||||||| || | |||||| | || |||| ||| Sbjct 1441 TGGTACAGTAATAACTGCTTGAGTTACCTTTTCTCCAAGATA 1482 Score = 114 bits (126), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 ||||| ||||| | || || || ||||||||||| || ||| | | || |||||||| Sbjct 1328 AAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTCTAAACCG 1387 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 |||||||| ||| || ||||||||| | || || ||||||||||| ||||||||| Sbjct 1388 GCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGCTGGTACA 1447 Query 322361 GTAATAACTGCTT 322373 ||||||||||||| Sbjct 1448 GTAATAACTGCTT 1460 >seq52071 Length=3253 Score = 118 bits (130), Expect = 8e-21 Identities = 654/1033 (63%), Gaps = 24/1033 (2%) Strand=Plus/Minus Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 ||| || ||||||| || || || |||| |||||| || || || |||||||| || Sbjct 3210 CTTGGGGATACGAGTAGAGCCACCGACTAGTACAATATCGTGAACGGCGGATTTATCGAG 3151 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAAC 517811 |||| ||| ||| ||||| || || || ||| ||| | || | || | | Sbjct 3150 CTTTGCATCGCGTAAGGACTTTTCGACCGGATCCAGAGT-GCTGCGGAAGAGATCGGCAT 3092 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 517871 || || ||||| |||||| || | || | | | | || || || ||| | | | Sbjct 3091 TCAGCTCCTCGAACCTAGCTCGGGTGACAGAGGTGTAAAAGTCTATGCCGTCGTAGAGGG 3032 Query 517872 AATCAACTTCAATCGTAG---TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 |||||| |||| ||| | | | | | || || ||| | | ||||| ||||||| Sbjct 3031 AATCAATCTCAA-CGTTGGCCTGCGCGCTGGAGCTGAGAGTCCTC--TTAGCTCGTTCAC 2975 Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTT 517986 | || ||||| || | ||| | ||| ||| || | | | || | || || || Sbjct 2974 AAGCCGTCCTAAGACGTCGGACTGCTC--GCTTGTTATCAGTGATGTCCTTCTTGTACTT 2917 Query 517987 TCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||| |||| ||| | ||| | || | | ||| ||||| || ||||| || Sbjct 2916 TCGCTTGAACTCTTGTACAAA--ATGATTGACCATTCTATTGTCAAAGTCCTCACCGCCG 2859 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | ||| | | || | ||| | ||||| || | | ||| | Sbjct 2858 AGATGGGTGTCACCGGCCGTGGACTTGACCTCGAAGATACCATCCTCGATTGTCAATATG 2799 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 518164 | ||||| ||| ||||| || | |||||| || | || || || || Sbjct 2798 GAGACATCGAAGGTGCCACCGCCAAGATCAAAGATCAAGACGTTACGCTCACAACCTATC 2739 Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | || || |||| |||||| || || ||||| || || || || | ||| Sbjct 2738 TTCTTGTCTAAGCCGTAGGCAATAGCAGCGGCCGTAGGTTCGTTGATTATCCTGAGTACA 2679 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| ||||| | || ||||| ||||| ||||| | || ||||| || || Sbjct 2678 TTCAGACCGGCAATCGTACCAGCATCCTTAGTAGCTTGACGCTGACTGTCGTTGAAGTAG 2619 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 || |||||||| | ||| || || || || || || | ||| ||||| || |||| Sbjct 2618 GCCGGAACAGTGACAACAGCGTCGGTGACAGTCTTGCCGAGATA--CGCTTCCGCGGTTT 2561 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG--GAATATTGCTTGGATTC 518400 ||||| || | | || ||| || || |||| ||| || ||| || | | | Sbjct 2560 CCTTCATCTTGATGAGAACCATGGAAGAGATTTCTTCGGGATAGAAGGTTTTATCGGCGC 2501 Query 518401 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 518460 | ||| || | | | || || || | ||| || | || | ||| Sbjct 2500 CCCT--ATAGTTAACCTTGATCTTCGGCTTCCCTCCTTCGCTAACGACGGTGAAGGACCA 2443 Query 518461 GTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 518520 | ||||| || || || || | || ||| || ||||| || || || Sbjct 2442 ATGCTTCATGTCGTCCTGGACGGGAGCATCCTCGAACCGTCTGCCTATTAAGCGCTTGGC 2383 Query 518521 ATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 518580 || || | ||||||| | || || || || | |||| || || ||||| || || || Sbjct 2382 GTCGAAGACAGTATTGCTAGGGTTCATGGCGACCTGATTCTTTGCAGCATCACCGATTAG 2323 Query 518581 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 518640 |||| || || ||||| | ||||| ||||| || | || ||||||||||| || Sbjct 2322 GCGTTCGGTGTCAGTAAAGGCGACATAGCTAGGAGTGGTCCTGTTGCCTTGATCATTTGC 2263 Query 518641 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 518700 ||||||||||| || |||| || ||||||| ||||| | || || || | || Sbjct 2262 GATAATTTCAACCTTGCCATGCTGGAATACACCAACACATGAGTAGGTAGTGCCGAGGTC 2203 Query 518701 AATACCAATAGCA 518713 ||| ||||||||| Sbjct 2202 AATGCCAATAGCA 2190 >seq237940 Length=756 Score = 91.5 bits (100), Expect = 1e-12 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 518503 || || | ||| ||||||| ||||| ||| |||| | ||| | || ||| Sbjct 337 ATCACCTCAAACGGCCAGTGCTTCATGTCTTCACGAACCGTCGTGTCGTCGAACCTTCTG 396 Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563 || || | || || ||||| || | ||||| || ||||| ||||| | |||| ||| Sbjct 397 CCGATCAGGCGCTTCGCATCGAACACCGTATTCGTCGGATTCATTGCCACCTGATTCTTG 456 Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 518623 || ||||| ||||||||| | ||||| || || || | || || || ||||| || Sbjct 457 GCCGCATCGCCAATCAGACGCTCTGTATCCGTGAAGGCCACGTAACTCGGCGTTGTACGG 516 Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC--TACACAAC 518681 || || ||||||||||| || || ||||| || || | || | ||||| | ||| | Sbjct 517 TTTCCCTGATCATTCGCGATGATCTCAACCTTGCCGTGCTGGAAGACACCGGTGCACGAG 576 Query 518682 TAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | | || || || || || ||||| || || Sbjct 577 T--ACGTCGTGCCCAAGTCGATACCGATGGC 605 >seq144730 Length=1378 Score = 91.5 bits (100), Expect = 1e-12 Identities = 122/166 (73%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 870812 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 870871 ||||| ||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| Sbjct 653 TCTTCCCCAAATATTGCTAAAGAGATGCATGTTGGACACTTAAGATCAACCATAATTGGT 712 Query 870872 GAATCTATTTGTAG-GGTATTAGAAATGTGT---GGACACGATGTTTATCGTATTAATCA 870927 || || | ||| |||| || | || || |||| | |||| || Sbjct 713 GA---TA-GTCTAGCCCGATTACTTTCGTTTTTGGGGCATTCTGTTACTAAATTTAACCA 768 Query 870928 TGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATT 870973 | | ||||||||||| ||||||||||| ||| | |||||| || || Sbjct 769 TATTGGTGATTGGGGTACTCAATTCGGGATGCTTATTGCTCATCTT 814 >seq92447 Length=2146 Score = 89.7 bits (98), Expect = 4e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 635396 AAATTATATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTG 635455 |||||| | |||| | |||| || || ||| | | ||| ||| || |||| | Sbjct 315 AAATTAGAAGATGCCAATGAGGCTGGGACAAAAAACTCAAATAGATGCACTTTAATACTT 256 Query 635456 ACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGAT 635515 || || || |||||||||||| | || ||| || | || | ||| | || |||||| Sbjct 255 ACCGAAGGTGATTCAGCTAAATCTTTGGCTGTGGCAGGATTGGGTGTCGTCGGGAGAGAT 196 Query 635516 TATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaa 635575 ||||| ||||||||||| || || |||||| | | || ||||| ||||| | || Sbjct 195 TATTACGGAGTTTTCCCTCTGAGGGGAAAATTGCTCAACGTTAGAGATGCAACAAATAGG 136 Query 635576 aaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAA 635629 || ||| || |||| ||||| | || | | ||||||| |||| ||| || Sbjct 135 CAACTTGTAGACAATGCTGAAATAAATGCCCTGATAAAAATTATTGGCCTTCAA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3765121689024988