Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq150668 100 3e-16 seq211321 93.3 5e-14 seq40145 93.3 5e-14 >seq150668 Length=1318 Score = 100 bits (110), Expect = 3e-16 Identities = 293/438 (67%), Gaps = 20/438 (5%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || || || | ||| ||||| ||||| || || || || || || || ||||||||| Sbjct 1160 TATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCCATA 1101 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 || ||||| ||||||| ||||||||| || | | | | ||||| || ||||||||| Sbjct 1100 AAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTG-TAACCAAGTTCAGACAGAAGACG 1042 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||| | ||| |||| || || |||| | ||||||| || |||||| | | Sbjct 1041 ATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGAGACT-GA 983 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTT-CTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 |||| | |||||| || ||| ||||| ||| || | || || || | || || || Sbjct 982 CGGGCAAAGCATC-AGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTATAGAA 924 Query 119445 TGAATAGT-TTCTGTCGATGGTTTGTTTCTCAA-GA---GTTTAAACA--ACTCTACGGC 119497 || || | |||| | | |||| ||| || | ||||| | | | | || Sbjct 923 TGGATCCTCTTCTCTTCCGGTTTTG-----CAATGATATGCTTAAATAGGAGGCAA--GC 871 Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557 || || ||| || || ||||| ||| || |||||||| |||||| || || || Sbjct 870 GAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGGG 811 Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617 ||| || || | || || |||||||| || || ||| || || || ||||| | || Sbjct 810 CATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACACC 751 Query 119618 CTCCACACAGGCGAAAGC 119635 || ||| || ||||| Sbjct 750 TTCTACAGCTGCAAAAGC 733 >seq211321 Length=874 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 180 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 238 >seq40145 Length=3774 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 8 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 66 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 3712 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 3770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586646614644400