Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq171037 84.2 2e-11 seq32333 84.2 2e-11 >seq171037 Length=1136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | ||||| || || ||||| ||| ||| | Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || |||| | |||| |||||| || ||||| ||| | ||| || || Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || || | || ||||| || |||||| | ||||| || | | ||| ||||||||| Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTAT--CCGATTATA 966 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | ||||| |||||||||||| ||||| |||| ||||| | | ||||| Sbjct 967 ATATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 1015 >seq32333 Length=4216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | ||||| || || ||||| ||| ||| | Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || |||| | |||| |||||| || ||||| ||| | ||| || || Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || || | || ||||| || |||||| | ||||| || | | ||| ||||||||| Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTAT--CCGATTATA 3810 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | ||||| |||||||||||| ||||| |||| ||||| | | ||||| Sbjct 3809 ATATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGG 3761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423764396284842