Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 149 1e-30
seq32333 149 1e-30
seq270304 113 8e-20
seq157544 105 1e-17
>seq171037
Length=1136
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| ||||| ||||| |||| ||||| ||||||||| |||||||| || | | ||
Sbjct 1000 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 941
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|||| ||||||||||||||||||||||| || || ||||| || |||||||||||||||
Sbjct 940 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 881
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| ||||| | ||| || ||| | || || || || ||||| | ||| || ||
Sbjct 880 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 821
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||| ||||| || |||||
Sbjct 820 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
Score = 125 bits (138), Expect = 1e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || ||||| | || | |||||| |||||| || || |||| || || |
Sbjct 775 CGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCA 716
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||| |||||||| | || ||||||||||| || || ||||| ||
Sbjct 715 TCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTG 656
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | |||| || || || || || || ||||| ||||| ||
Sbjct 655 TCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATT 596
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364
|| || || || || ||||| ||||||||||||||||||
Sbjct 595 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557
>seq32333
Length=4216
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| ||||| ||||| |||| ||||| ||||||||| |||||||| || | | ||
Sbjct 3776 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 3835
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|||| ||||||||||||||||||||||| || || ||||| || |||||||||||||||
Sbjct 3836 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 3895
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| ||||| | ||| || ||| | || || || || ||||| | ||| || ||
Sbjct 3896 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 3955
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||| ||||| || |||||
Sbjct 3956 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
Score = 120 bits (132), Expect = 5e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || ||||| | || | |||||| |||||| || || |||| || || |
Sbjct 4001 CGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCA 4060
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||| |||||||| | || ||||||||||| || || ||||| ||
Sbjct 4061 TCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTG 4120
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | |||| || || || || || || ||||| ||||| ||
Sbjct 4121 TCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATT 4180
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||||||||
Sbjct 4181 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
>seq270304
Length=645
Score = 113 bits (124), Expect = 8e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || ||||| | |||| || || ||||||||||| || | || | | |
Sbjct 90 CGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCA 149
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || ||||| || ||||| | || || ||||| | || || ||||| |||
Sbjct 150 TCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTA 209
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|||||||| || | || | |||| | ||||| | | ||||||||||| ||||||
Sbjct 210 TCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATA 269
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || |||| ||||| ||||| ||||||||
Sbjct 270 GTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
>seq157544
Length=1252
Score = 105 bits (116), Expect = 1e-17
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| || ||||| || | || | | ||| |||| ||||| || |||||||||| |
Sbjct 1215 AATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACG 1156
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
||| ||||| || || || || || ||||| || ||||| | ||| | ||| || ||
Sbjct 1155 CTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTTAGCTTTCACATTCTCTATCGT 1096
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||| |||||||| || || || ||||| || || || || || ||||| ||||||||
Sbjct 1095 ATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGTCTTTACGAATATTTG 1036
Query 193358 CAT 193360
|||
Sbjct 1035 CAT 1033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 896096289339360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |