Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq171037 149 1e-30 seq32333 149 1e-30 seq270304 113 8e-20 seq157544 105 1e-17 >seq171037 Length=1136 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || ||||| ||||| |||| ||||| ||||||||| |||||||| || | | || Sbjct 1000 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 941 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| ||||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct 940 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 881 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | ||| || ||| | || || || || ||||| | ||| || || Sbjct 880 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 821 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| ||||| || ||||| Sbjct 820 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 Score = 125 bits (138), Expect = 1e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | |||||| |||||| || || |||| || || | Sbjct 775 CGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCA 716 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| |||||||| | || ||||||||||| || || ||||| || Sbjct 715 TCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTG 656 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| || || || || || || ||||| ||||| || Sbjct 655 TCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATT 596 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || || || || ||||| |||||||||||||||||| Sbjct 595 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 >seq32333 Length=4216 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || ||||| ||||| |||| ||||| ||||||||| |||||||| || | | || Sbjct 3776 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 3835 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| ||||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct 3836 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 3895 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | ||| || ||| | || || || || ||||| | ||| || || Sbjct 3896 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 3955 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| ||||| || ||||| Sbjct 3956 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Score = 120 bits (132), Expect = 5e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | |||||| |||||| || || |||| || || | Sbjct 4001 CGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCA 4060 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| |||||||| | || ||||||||||| || || ||||| || Sbjct 4061 TCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTG 4120 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| || || || || || || ||||| ||||| || Sbjct 4121 TCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATT 4180 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||||||||||||| Sbjct 4181 GTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 >seq270304 Length=645 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | |||| || || ||||||||||| || | || | | | Sbjct 90 CGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACCA 149 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||| || ||||| | || || ||||| | || || ||||| ||| Sbjct 150 TCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTTA 209 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 |||||||| || | || | |||| | ||||| | | ||||||||||| |||||| Sbjct 210 TCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTATA 269 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| ||||| ||||| |||||||| Sbjct 270 GTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 >seq157544 Length=1252 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || | || | | ||| |||| ||||| || |||||||||| | Sbjct 1215 AATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACG 1156 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || || || || ||||| || ||||| | ||| | ||| || || Sbjct 1155 CTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTTAGCTTTCACATTCTCTATCGT 1096 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||| |||||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 1095 ATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGTCTTTACGAATATTTG 1036 Query 193358 CAT 193360 ||| Sbjct 1035 CAT 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896096289339360