Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq171037 134 3e-26 seq32333 129 1e-24 seq270304 123 5e-23 >seq171037 Length=1136 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | ||| | ||| | |||||| ||||| ||||| Sbjct 790 ATGCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCT 731 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || | |||| || | |||||| |||||||| || | || |||||||||||| Sbjct 730 GATAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGT 671 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||||| || ||| | || ||||| Sbjct 670 GGAATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCC 611 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 ||||| |||||||| || || ||||| | |||||| | |||||| ||||||||| Sbjct 610 ACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 Score = 122 bits (134), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 192334 TGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGT 192393 || ||||||| ||||| ||||||||||| |||||||| || || || | |||| Sbjct 991 TGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGT 932 Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 || || ||||| ||||||| || || ||||| || ||||||||||||||||| |||||| Sbjct 931 TTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTA 872 Query 192454 TTTTTTACATTAGTTATAGAATCTGAC--GATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 ||| | || || | | | || ||||| ||||| | |||||| || || || | Sbjct 871 GCTTTGATGTT--TTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCG 814 Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536 | | ||||||| ||| |||||||| Sbjct 813 TCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | ||| | ||| | |||||| ||||| ||||| Sbjct 3986 ATGCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCT 4045 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || | |||| || | |||||| |||||||| || | || |||||||||||| Sbjct 4046 GATAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGT 4105 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||||| || ||| | || ||||| Sbjct 4106 GGAATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCC 4165 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || || ||||| | |||||| | |||||| |||||| Sbjct 4166 ACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 Score = 122 bits (134), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 192334 TGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGT 192393 || ||||||| ||||| ||||||||||| |||||||| || || || | |||| Sbjct 3785 TGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGT 3844 Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 || || ||||| ||||||| || || ||||| || ||||||||||||||||| |||||| Sbjct 3845 TTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTA 3904 Query 192454 TTTTTTACATTAGTTATAGAATCTGAC--GATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 ||| | || || | | | || ||||| ||||| | |||||| || || || | Sbjct 3905 GCTTTGATGTT--TTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCG 3962 Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536 | | ||||||| ||| |||||||| Sbjct 3963 TCAGAGTTTTAACAAAAATCTGCAT 3987 >seq270304 Length=645 Score = 123 bits (136), Expect = 5e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| || || || | |||||| | |||| ||| | ||||| || || |||| Sbjct 67 GTTCAATTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATAT 126 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 |||| ||||| | ||| || |||| || | || || ||||| || || | || || | Sbjct 127 TATAGTCAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCT 186 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| | || || ||||| ||||||||||| || || ||||| | || || || Sbjct 187 GATCTGAGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTG 246 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||| |||||||| || || ||||| || ||||||||||||| ||| || ||||| Sbjct 247 TCGGTTCAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980489066367300