Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq171037 132 9e-26 seq32333 132 9e-26 seq75644 111 3e-19 seq110960 102 1e-16 seq270304 96.9 6e-15 >seq171037 Length=1136 Score = 132 bits (146), Expect = 9e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || || |||| || || | || ||||||| ||||| |||||||||||| ||| Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || ||| || | |||||| || ||||||||||||| || |||||||| || Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC--GATTCTA 172020 ||||||||||||||||| |||||| ||| | || || | | | | || ||||| | Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTT--TTCCACTGTGTCACTTGATTCGA 838 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| | |||||| || || || || | ||||||| || |||||||| Sbjct 837 CTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| | ||| | |||||| |||||| |||||| Sbjct 790 ATGCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCT 731 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | | | || || | |||||| ||||||||||| | || ||||| |||||| Sbjct 730 GATAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGT 671 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||||| || ||| || || ||||| Sbjct 670 GGAATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCC 611 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| |||||||| || || ||||| | |||||| | ||||| ||||||||| Sbjct 610 ACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 >seq32333 Length=4216 Score = 132 bits (146), Expect = 9e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || || |||| || || | || ||||||| ||||| |||||||||||| ||| Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || ||| || | |||||| || ||||||||||||| || |||||||| || Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC--GATTCTA 172020 ||||||||||||||||| |||||| ||| | || || | | | | || ||||| | Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTT--TTCCACTGTGTCACTTGATTCGA 3938 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| | |||||| || || || || | ||||||| || |||||||| Sbjct 3939 CTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| | ||| | |||||| |||||| |||||| Sbjct 3986 ATGCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCT 4045 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | | | || || | |||||| ||||||||||| | || ||||| |||||| Sbjct 4046 GATAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGT 4105 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||||| || ||| || || ||||| Sbjct 4106 GGAATACCTTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCC 4165 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| || || ||||| | |||||| | ||||| |||||| Sbjct 4166 ACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 >seq75644 Length=2520 Score = 111 bits (122), Expect = 3e-19 Identities = 278/418 (67%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||||||||| ||| || || || ||||||||||| || || | || || Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA--TAT 38948 | |||||||||||| ||||| | | ||| || | ||||| || | | | ||| Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAA--TCTTCTCGTAACCAAGCTCGTAT 700 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 | || | |||||| |||||||| | || | |||| | ||||| ||||| || | Sbjct 701 AGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATC 760 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | ||| | ||||| || |||| || || | |||||||| || | || | || | | Sbjct 761 AGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 820 Query 39069 at--cataattatattattttttgataatttatatttaatatgattcgcatataGTAAAC 39126 || ||||| | || || | | ||| | ||||| || | || | | Sbjct 821 ATAGCATAAACACGTTCCTTATCGGGCTTTTTCACG--ATATGTTTGA---ACAGAAGGC 875 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 | ||||| || || || | |||||||| | | |||| |||||| || || || || | Sbjct 876 AAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGC 935 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 ||||||| | || | ||| |||||||||||||| || |||||||| | |||||||| Sbjct 936 CTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAA 993 >seq110960 Length=1818 Score = 102 bits (112), Expect = 1e-16 Identities = 276/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||||||||| ||| || || || ||||| ||||| || || | || || Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA--TAT 38948 | |||||||||||| ||||| | | ||| || | ||||| || | | | || Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAA--TCTTCTCGTAACCAAGCTCGTAC 1119 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 | || | |||||| |||||||| | || | |||| | ||||| ||||| || | Sbjct 1118 AGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATC 1059 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | ||| | ||||| || |||| || || | |||||||| || | || | || | | Sbjct 1058 AGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 999 Query 39069 at--cataattatattattttttgataatttatatttaatatgattcgcatataGTAAAC 39126 || ||||| | || || | | ||| | ||||| || | || | | Sbjct 998 ATAGCATAAACACGTTCCTTATCGGGCTTTTTCACG--ATATGTTTGA---ACAGAAGGC 944 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 | ||||| || || || | |||||||| | | |||| |||||| || || || || | Sbjct 943 AAGCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGC 884 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 ||||||| | || | ||| |||||||||||||| || |||||||| | |||||||| Sbjct 883 CTGGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAA 826 >seq270304 Length=645 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || || || || | ||| || | |||| ||| | ||||| || || |||||||| Sbjct 72 ATTATGCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAG 131 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | | || | || || | || || ||||| ||||| | || || || || Sbjct 132 TCAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCT 191 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 | || || ||||| ||||||||||| || || ||||| | ||||| || || | Sbjct 192 GAGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGT 251 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || ||||||||||||| || || ||||| Sbjct 252 TCAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901556209748400