Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq93010 123 7e-23
seq56037 104 7e-17
seq150668 86.0 2e-11
>seq93010
Length=2134
Score = 123 bits (136), Expect = 7e-23
Identities = 382/578 (66%), Gaps = 21/578 (4%)
Strand=Plus/Minus
Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994
||||| ||||| ||||| ||||| || ||| || | || ||| ||||| ||||
Sbjct 720 CCAAAGGGCATAAAAAAGATCCCTAGCACGAACCTCTTCTGCACCAGTG-TTCTTGCGTA 662
Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054
|||| ||| ||| || | ||| |||||| ||||| || ||||| ||||
Sbjct 661 ATTCTACGAAGGAGAGAATGTCCGTATGCCATGGCTCGAGATAGATGGCAAAGGCACCAG 602
Query 156055 TCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111
|||| || ||||||||||| || || |||||||| || || || |||| || ||| |
Sbjct 601 GCCTCCTGTTACCACCCTGATCGACGTAGCGAGCAGTATTGTTAAAAACACGTAACATTG 542
Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171
| | || |||||||| ||||| || || ||||| | ||||| ||| |
Sbjct 541 GCACAAGTCCATTGGAGTAACCATTCGTACCAGCAATATAGGTACCAGTGCCGCGTATGC 482
Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAG 156231
||||| || || |||||||| || | | ||||||||| | || |||| | | |
Sbjct 481 AATGAACATTTACACCAATACCCCCAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTG 422
Query 156232 TATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA--CGAACTTAA 156289
||| |||| || ||||| ||||| | ||||| | ||| | || | || |
Sbjct 421 TATCATAAATGCCCTCAATGCTGTCATCCTTCATTGTGACAAGAAAACAGCTGGAC--AT 364
Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349
|| || | |||||| |||| || || || || || | || ||| |||| ||||
Sbjct 363 CTGGGGCCTTGGTGTACCAGAATTAAAGAGAGTGGGGGAAGCGTGAGTAAACCACTTCAA 304
Query 156350 AGACATATAATCGTATGTCTC-CTTAAT-CTTCTCAAG--ATTAGACCCGTGAATACAGA 156405
||||| | | ||| || || | | | | ||| | | || | | |||||||| |
Sbjct 303 GGACATCAAGTTGTAGGTTTCACAGACTGCCTCT-ATGTCATCAAA---GTGAATACCAA 248
Query 156406 TAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA--TCACTCCATCAATTCGCAG 156463
| ||||| |||||| ||||||||||||||| || || | | | ||| ||| ||
Sbjct 247 TTGAGACTCTCATCAGCATATGCTGAGGACGTTCATGAACTTTATT--ATCGATTTTAAG 190
Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501
||| |||| | | |||| || ||||| || || ||||
Sbjct 189 AAGATATGAGTGCTCCAATGTCTTAAAGCCAAAGTAAT 152
>seq56037
Length=3109
Score = 104 bits (114), Expect = 7e-17
Identities = 226/336 (67%), Gaps = 2/336 (1%)
Strand=Plus/Minus
Query 302545 ACGGTCATATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAAT 302603
|| ||| |||||| || ||||| || || ||||| |||||| ||||||||||||||
Sbjct 1001 ACAGTCCCATCATATTTAACCATAACTGACT-CCATAGCCTTGATCAAACGACGCTGAAT 943
Query 302604 ATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGC 302663
|| || || | ||||| ||||||||||||||||| || | ||||| ||||||||
Sbjct 942 GTAGCCCGTCTCTGCAGTTTTGACAGCTGTATCAATTAGGCCTTCTCGACCTCCCATAGC 883
Query 302664 ATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723
|||||| || | ||| || || || | | | | || ||||||| || || ||
Sbjct 882 ATGGAAAAAAAACTCAGTAGGAGTGAGGCCAGCCAGATAAGAATTCTCAACAAAGCCGCG 823
Query 302724 CGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783
| || || || || || | |||| || || | || | | | |||| |
Sbjct 822 AGATTCCGGACCATAATCATCCTGGATAAAATGGGGTAAAGTTCGATGACGAAAGCCAAA 763
Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|| || | || || |||||||| || ||||| | ||| | || | || ||||||||
Sbjct 762 GGGAATTCTTTTGCCTTCAACGTTTTGTTGTCCGACGCAAGCGATAACTTGAGAAATATT 703
Query 302844 TAAATCACTGCCCTTGGAGCCAGCATTTACCATAAT 302879
| | | || |||||||||||| ||||| ||
Sbjct 702 AATACGAGACCCTTTGGAGCCAGCAACCACCATTAT 667
>seq150668
Length=1318
Score = 86.0 bits (94), Expect = 2e-11
Identities = 120/166 (72%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT-TTAGGAACACGGTTTATGGG 133290
|| ||||| ||||| |||||||| || ||| | |||||| ||| | |||||||
Sbjct 418 GCATTTTTCGCTGCTAGTGATGGGATAGTTTTGGAAAATCTTATCGAG-CGGTTTAGCCA 476
Query 133291 AGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATAT 133350
||||||||| | | |||| || |||||||| |||| || || || || |||||
Sbjct 477 AGAAGTTCAGATCCCAGAAGTTCGCTGTTTTTATGGCATACAAATCGCTATTGAGAATAT 536
Query 133351 CCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGAT 133396
|||||| | || ||| ||| |||||||||||||||| ||||
Sbjct 537 ACATTCTGAAATGTACTCTCTTCTTATTGATACTTACATCAGAGAT 582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1465851073142126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |