Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq268294 143 3e-28 seq110960 104 3e-16 seq75644 104 3e-16 >seq268294 Length=651 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || |||||| ||||||||||||||||| || | | || Sbjct 37 GCTTGGCCAGCTCCCCAGGCAAGAGCAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 96 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||| || ||||||| |||| | Sbjct 97 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCTTCCCCTGCGATGCGCTCGAAGA 156 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| ||||| |||||||||| ||| | |||| |||||||| ||||||| Sbjct 157 CATCGTTAACAAAGGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTATCGGGGT 216 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||| ||||| Sbjct 217 GCACCTGCTTGAGCACTTTGTA 238 >seq110960 Length=1818 Score = 104 bits (114), Expect = 3e-16 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||||| || | ||| ||||| |||| | ||| ||||| ||||| |||||| Sbjct 923 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 864 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || |||||||| || | |||| |||||||| || || |||| || |||| || ||||| Sbjct 863 TTAAGCCAAAATATAGACGCA-AAACTGCCGGAAAAGAAGACTCCTTCGATTGCAGCAAA 805 Query 869299 GCCGATGAGCCGCTCGGCAAAGGT 869322 | | | ||||||||||| || Sbjct 804 GGCTGCAATACGCTCGGCAAACGT 781 >seq75644 Length=2520 Score = 104 bits (114), Expect = 3e-16 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||||| || | ||| ||||| |||| | ||| ||||| ||||| |||||| Sbjct 896 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 955 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || |||||||| || | |||| |||||||| || || |||| || |||| || ||||| Sbjct 956 TTAAGCCAAAATATAGACGCA-AAACTGCCGGAAAAGAAGACTCCTTCGATTGCAGCAAA 1014 Query 869299 GCCGATGAGCCGCTCGGCAAAGGT 869322 | | | ||||||||||| || Sbjct 1015 GGCTGCAATACGCTCGGCAAACGT 1038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6081174098428166