Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 127 2e-24
seq32333 127 2e-24
seq270304 107 2e-18
seq157544 107 2e-18
>seq171037
Length=1136
Score = 127 bits (140), Expect = 2e-24
Identities = 172/237 (73%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| ||||||| || || || || || ||||| | ||||| ||| | |
Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||||| |||| | ||| || |||||||| ||||||||||| || || || ||
Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGG--ATTCGAGAAACA-TGTCAGATTAT 24880
||||| || || |||||||| ||||| || || | | ||| ||| | || ||||||
Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCG---TACATTATCCGATTAT 965
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACT 24937
|| ||||| || ||||| || | ||| ||||| | || | | |||||| || ||
Sbjct 966 AATATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGCTGACCT 1022
>seq32333
Length=4216
Score = 127 bits (140), Expect = 2e-24
Identities = 172/237 (73%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| ||||||| || || || || || ||||| | ||||| ||| | |
Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||||| |||| | ||| || |||||||| ||||||||||| || || || ||
Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGG--ATTCGAGAAACA-TGTCAGATTAT 24880
||||| || || |||||||| ||||| || || | | ||| ||| | || ||||||
Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCG---TACATTATCCGATTAT 3811
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACT 24937
|| ||||| || ||||| || | ||| ||||| | || | | |||||| || ||
Sbjct 3810 AATATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGCTGACCT 3754
>seq270304
Length=645
Score = 107 bits (118), Expect = 2e-18
Identities = 150/207 (72%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761
||||||| || ||| ||||||| ||||||| |||||||| || || ||||| ||| | |
Sbjct 306 CGATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGA 247
Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
| | || || |||| || || |||||| ||||| || ||||| || || | ||||
Sbjct 246 CAAATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATC 187
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTA 24879
| ||| | | || || || || || ||||| || ||| ||| | || | || || ||
Sbjct 186 AGCAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGT-ACACTT-TCTGACTA 129
Query 24880 TAACATTCAAAAGGAATCGACACTACA 24906
||| || ||||||||||| || || ||
Sbjct 128 TAATATACAAAAGGAATCTACTCTTCA 102
>seq157544
Length=1252
Score = 107 bits (118), Expect = 2e-18
Identities = 151/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|||||||| || || | || || || || || || ||||| || ||||| || || |
Sbjct 1030 ACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCG 1089
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||| || |||| | || ||| || || || || || || || || || || |||
Sbjct 1090 AGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGAT 1149
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || ||| | || ||||| || |||||||| |||||| | | ||||||| ||
Sbjct 1150 CAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTAC 1209
Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910
||||||||||||||||| || ||||| ||||
Sbjct 1210 AACATTCAAAAGGAATCAACTCTACATCTTG 1240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448118266239440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |