Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq171037 127 2e-24 seq32333 127 2e-24 seq270304 107 2e-18 seq157544 107 2e-18 >seq171037 Length=1136 Score = 127 bits (140), Expect = 2e-24 Identities = 172/237 (73%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || || || ||||| | ||||| ||| | | Sbjct 789 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 848 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||||| |||| | ||| || |||||||| ||||||||||| || || || || Sbjct 849 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 908 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGG--ATTCGAGAAACA-TGTCAGATTAT 24880 ||||| || || |||||||| ||||| || || | | ||| ||| | || |||||| Sbjct 909 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCG---TACATTATCCGATTAT 965 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACT 24937 || ||||| || ||||| || | ||| ||||| | || | | |||||| || || Sbjct 966 AATATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGCTGACCT 1022 >seq32333 Length=4216 Score = 127 bits (140), Expect = 2e-24 Identities = 172/237 (73%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || || || ||||| | ||||| ||| | | Sbjct 3987 ATGCAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGT 3928 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||||| |||| | ||| || |||||||| ||||||||||| || || || || Sbjct 3927 GACACAGTGGAAAACATCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCCCCTGACCAG 3868 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGG--ATTCGAGAAACA-TGTCAGATTAT 24880 ||||| || || |||||||| ||||| || || | | ||| ||| | || |||||| Sbjct 3867 CAACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCG---TACATTATCCGATTAT 3811 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACT 24937 || ||||| || ||||| || | ||| ||||| | || | | |||||| || || Sbjct 3810 AATATTCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACTCAGGGGAGGCTGACCT 3754 >seq270304 Length=645 Score = 107 bits (118), Expect = 2e-18 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||| || ||| ||||||| ||||||| |||||||| || || ||||| ||| | | Sbjct 306 CGATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGA 247 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | | || || |||| || || |||||| ||||| || ||||| || || | |||| Sbjct 246 CAAATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATC 187 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTA 24879 | ||| | | || || || || || ||||| || ||| ||| | || | || || || Sbjct 186 AGCAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGT-ACACTT-TCTGACTA 129 Query 24880 TAACATTCAAAAGGAATCGACACTACA 24906 ||| || ||||||||||| || || || Sbjct 128 TAATATACAAAAGGAATCTACTCTTCA 102 >seq157544 Length=1252 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || || | || || || || || || ||||| || ||||| || || | Sbjct 1030 ACGATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCG 1089 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || |||| | || ||| || || || || || || || || || || ||| Sbjct 1090 AGCGATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGAT 1149 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| | || ||||| || |||||||| |||||| | | ||||||| || Sbjct 1150 CAGCAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTAC 1209 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||||||||| || ||||| |||| Sbjct 1210 AACATTCAAAAGGAATCAACTCTACATCTTG 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448118266239440