Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq171037 104 2e-17 seq32333 96.9 3e-15 >seq171037 Length=1136 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110255 ATTTATAAGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACC 110314 |||| ||| || |||||||||||||||||||||||| | || || || || ||||| Sbjct 543 ATTTTAAAGCAATCTAAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACT 602 Query 110315 GTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAA 110374 | ||| ||| | || || | | | ||||| ||||||| ||||| ||| Sbjct 603 CTTGAAGTGGAATCAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAA 662 Query 110375 GGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGA 110434 || | || ||||||||||| ||||||| ||| || ||||| || || |||| ||| Sbjct 663 GGTATTCCACCTGATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGG 722 Query 110435 ACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 || | | |||||||| ||||| ||||| || || Sbjct 723 ACCCTATCAGATTACAATATTCAGAAAGAGTCAAC 757 >seq32333 Length=4216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||||||||| | || || || || ||||| | ||| ||| | Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | ||||| ||||||| ||||| ||||| | || ||||| Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| ||||||| ||| || ||||| || || |||| ||| || | | |||||||| Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||| ||||| || || Sbjct 4036 TATTCAGAAAGAGTCAAC 4019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411249641248214