Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq268294 192 9e-43 seq110960 100 4e-15 seq75644 100 4e-15 >seq268294 Length=651 Score = 192 bits (212), Expect = 9e-43 Identities = 187/241 (78%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| |||||||| ||||| || ||||||||| ||||||| || || ||| || Sbjct 1 ACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCAGGCAAGA 60 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 |||||| ||||||||||||||||| |||| | ||| ||| ||||||||| | | | Sbjct 61 GCAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAGTGAG 120 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 |||||||| ||| || ||||||| |||| | ||||| ||||| |||||||||| Sbjct 121 CCAGGCGGGAGGCTTCCCCTGCGATGCGCTCGAAGACATCGTTAACAAAGGAGTTCATGA 180 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | ||| | ||| |||||||| ||||||||||||||||||||||| ||||| | Sbjct 181 TGCTCATGGCCTTGGAAGAGATGCCGGTATCGGGGTGCACCTGCTTGAGCACTTTGTACA 240 Query 1485713 C 1485713 | Sbjct 241 C 241 >seq110960 Length=1818 Score = 100 bits (110), Expect = 4e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||||| || | ||| ||||| ||| | ||| ||||| ||||| |||||| Sbjct 923 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 864 Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || |||||||| || | | || |||||||| || || |||| || |||| || ||||| Sbjct 863 TTAAGCCAAAATATAGACGCA-AAACTGCCGGAAAAGAAGACTCCTTCGATTGCAGCAAA 805 Query 794460 GCCGACGAGCCGCTCGGCAAAAGT 794483 | | | | ||||||||||| || Sbjct 804 GGCTGCAATACGCTCGGCAAACGT 781 >seq75644 Length=2520 Score = 100 bits (110), Expect = 4e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||||||||| || | ||| ||||| ||| | ||| ||||| ||||| |||||| Sbjct 896 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 955 Query 794401 TTGAGCCAAAAGAT-GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || |||||||| || | | || |||||||| || || |||| || |||| || ||||| Sbjct 956 TTAAGCCAAAATATAGACGCA-AAACTGCCGGAAAAGAAGACTCCTTCGATTGCAGCAAA 1014 Query 794460 GCCGACGAGCCGCTCGGCAAAAGT 794483 | | | | ||||||||||| || Sbjct 1015 GGCTGCAATACGCTCGGCAAACGT 1038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7882589701648722