Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq171037 91.5 1e-13 seq32333 91.5 1e-13 seq157544 87.8 1e-12 seq277908 84.2 1e-11 >seq171037 Length=1136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | || || |||||||| | || || |||||||| ||||| || ||| Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || || || ||||| |||||||| || || | |||||||||||| | || Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | ||||| ||||| | | | | | ||| | | ||||| Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || || ||||| ||||| || || || ||||| ||||||||| Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | || || |||||||| | || || |||||||| ||||| || ||| Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || || || ||||| |||||||| || || | |||||||||||| | || Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | ||||| ||||| | | | | | ||| | | ||||| Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || || ||||| ||||| || || || ||||| ||||||||| Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCATG 3988 >seq157544 Length=1252 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || || |||| |||| || || || || || || || Sbjct 1223 TCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTGTTTGCCTGCAAAA 1164 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || ||||| || | || | |||||||| || | ||||| ||| || Sbjct 1163 ATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTTAGCTTTCACATTC 1104 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||||| || | | ||| || || | || || |||||||| || ||||||||||| Sbjct 1103 TCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGTAAGGGTCTTTACG 1044 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 1043 AATATTTGCAT 1033 >seq277908 Length=620 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | |||||| || || | ||| ||||||||||||||||||||| || Sbjct 522 CCACCACGCAAGCGCAGGACAAGATGCAAGGTCGACTCCTTCTGAATGTTATAGTCGGAA 581 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||| |||| | || |||||||||||||| ||||| ||| Sbjct 582 AGGGTGCGTCCGTCCTCCAGTTGCTTTCCTGCGAATATC 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324436895790362