Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 140 2e-28
seq270304 138 9e-28
seq32333 134 1e-26
seq157544 100 2e-16
>seq171037
Length=1136
Score = 140 bits (154), Expect = 2e-28
Identities = 165/221 (75%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | |||||| || || ||||| ||||| || ||||| | | ||| |
Sbjct 776 ACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCC 717
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||||||||| |||||| | || | ||||| ||||| || |||||||| || ||
Sbjct 716 ATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTT 657
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | || || | |||| |||||| ||| ||||||||||| |
Sbjct 656 GTCTTG-AATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAA 598
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790
| || || ||||| | ||||| |||||||| |||||||||
Sbjct 597 TTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | | ||||||| || | || |||||||| ||||| |||||||| |
Sbjct 1015 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 956
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || ||| || || |||||||| || ||| | || |||| |||||| || || |||
Sbjct 955 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 896
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || ||||| ||||| | ||| ||||| |||| || |||||| ||| |||
Sbjct 895 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 836
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | ||| || || ||||| || | ||||||||||| ||||||||
Sbjct 835 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq270304
Length=645
Score = 138 bits (152), Expect = 9e-28
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | |||||| || ||||| ||||| || ||||| || | || || |||
Sbjct 89 ACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACC 148
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || ||||| | || | ||||||||||| | |||||||| || ||
Sbjct 149 ATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTT 208
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||||| ||| || ||| |||| ||||| | | |||| ||||| || |||||
Sbjct 209 ATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTAT 268
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||| || ||||| ||||||||||| || |||||
Sbjct 269 AGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
>seq32333
Length=4216
Score = 134 bits (148), Expect = 1e-26
Identities = 162/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | |||||| || || ||||| ||||| || ||||| | | ||| |
Sbjct 4000 ACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCC 4059
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||||||||| |||||| | || | ||||| ||||| || |||||||| || ||
Sbjct 4060 ATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTT 4119
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | || || | |||| |||||| ||| ||||||||||| |
Sbjct 4120 GTCTTG-AATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAA 4178
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || ||||| | ||||| |||||||| ||||||
Sbjct 4179 TTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | | ||||||| || | || |||||||| ||||| |||||||| |
Sbjct 3761 CCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGAT 3820
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || ||| || || |||||||| || ||| | || |||| |||||| || || |||
Sbjct 3821 AATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGA 3880
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || ||||| ||||| | ||| ||||| |||| || |||||| ||| |||
Sbjct 3881 ATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACT 3940
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | ||| || || ||||| || | ||||||||||| ||||||||
Sbjct 3941 TCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
>seq157544
Length=1252
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| || || ||||| ||||||||||| || || | | ||||||
Sbjct 1248 ACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACC 1189
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || |||||||| ||| | || | | ||||||||||| || || ||||| ||
Sbjct 1188 ATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTT 1129
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || |||||| | ||| ||| | |||| || || || || || || || |
Sbjct 1128 ATCCTG-AATTTTAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGA 1070
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || ||||| | ||| || || ||||| |||||
Sbjct 1069 TAGTCTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 383733756002118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |