Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq133394 140 2e-27
seq52071 122 6e-22
seq144730 91.5 1e-12
seq237940 86.0 5e-11
>seq133394
Length=1506
Score = 140 bits (154), Expect = 2e-27
Identities = 128/162 (79%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393
|||||||| |||||| || || |||||||| ||||||||||| |||||||| || || |
Sbjct 1321 TTTATCAAAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTC 1380
Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453
| ||| |||||| |||| || || ||||| ||||| | ||| | ||| |||||||| ||
Sbjct 1381 TAAACCGGCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGC 1440
Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495
|| ||||||||||| || | ||||| | || ||||| |||
Sbjct 1441 TGGTACAGTAATAACTGCTTGAGTTACCTTTTCTCCAAGATA 1482
Score = 114 bits (126), Expect = 1e-19
Identities = 105/133 (79%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175
||||| ||||| | || || || ||||||||||| || ||| | | || ||||||||
Sbjct 1328 AAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTCTAAACCG 1387
Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235
|||||||| ||| || ||||||||| | || || ||||||||||| |||||||||
Sbjct 1388 GCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGCTGGTACA 1447
Query 86236 GTAATAACTGCTT 86248
|||||||||||||
Sbjct 1448 GTAATAACTGCTT 1460
Score = 89.7 bits (98), Expect = 4e-12
Identities = 265/402 (66%), Gaps = 20/402 (5%)
Strand=Plus/Plus
Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470
|| |||||||| |||||| || || | |||||||| ||||| | |||||| || |||
Sbjct 407 GTAGATTTATCCTTGGCAGTAACTTTCACTATACCATTAGCATCTATATCAAAAGTTACT 466
Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530
|||||||| || | |||| ||||| || || || || | ||||||| || ||
Sbjct 467 TCAATTTGTGGACCTCCTCGACTTGCAGGGGGTATACCATCAAGATTAAATTGACCAAGT 526
Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590
|||||||| | | | || |||||| | |||| | ||||| || || |
Sbjct 527 AACTTATTATCAGCGGCCATGTCTCTTTCACCTTGAAAAACTCTAATAGTTACAGCATGT 586
Query 281591 TGATTATCTGAATAAGTTGT--AAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTT 281647
|||||||| | || ||| | | | | ||| | |||||| ||||| || || ||
Sbjct 587 TGATTATC---CTCAGCTGTAGAGAAAATTTGGCTCTTTTTAGTTGGAATGGTAGTATTA 643
Query 281648 CTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTG 281707
| |||||| | |||| | | || ||| ||||| | ||| | ||| ||||||||
Sbjct 644 CGATCAATCAACCTGGTGAATACTCCTCCAAGAGTTTCAATACCTAAAGATAGAGGAGTA 703
Query 281708 ACATCAACTAGGACAATATTTTGAAGTT-TTTCATCAGTTTGACCAACAAGAATAGCTGC 281766
|| || | | ||||||| | |||| ||| | | ||| || | | |
Sbjct 704 ACGTC--CAACAACAATATAT--CAGTTACTTCTTTA-TTTAAC--------ACTCCACC 750
Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAAC 281808
||| |||||||| || | |||||| ||||||| ||||| ||
Sbjct 751 TTGGATAGCAGCTCCTAAGGCAACAACTTCATCTGGATTGAC 792
>seq52071
Length=3253
Score = 122 bits (134), Expect = 6e-22
Identities = 655/1033 (63%), Gaps = 24/1033 (2%)
Strand=Plus/Minus
Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919
||| || ||||||| || || || |||| |||||| || || || |||||||| ||
Sbjct 3210 CTTGGGGATACGAGTAGAGCCACCGACTAGTACAATATCGTGAACGGCGGATTTATCGAG 3151
Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAAC 281978
|||| ||| ||| ||||| || || || ||| ||| | || | || | |
Sbjct 3150 CTTTGCATCGCGTAAGGACTTTTCGACCGGATCCAGAGT-GCTGCGGAAGAGATCGGCAT 3092
Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 282038
|| || ||||| |||||| || | || | | | | || || || ||| | | |
Sbjct 3091 TCAGCTCCTCGAACCTAGCTCGGGTGACAGAGGTGTAAAAGTCTATGCCGTCGTAGAGGG 3032
Query 282039 AATCAACTTCAATCGTAG---TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095
|||||| |||| ||| | | | | | || || ||| | | ||||| |||||||
Sbjct 3031 AATCAATCTCAA-CGTTGGCCTGCGCGCTGGAGCTGAGAGTCCTC--TTAGCTCGTTCAC 2975
Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTT 282153
| || ||||| || | ||| | ||| ||| || | | | || | || || ||
Sbjct 2974 AAGCCGTCCTAAGACGTCGGACTGCTC--GCTTGTTATCAGTGATGTCCTTCTTGTACTT 2917
Query 282154 TCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCC 282211
|| |||||| |||| ||| | ||| | || | | ||| ||||| || ||||| ||
Sbjct 2916 TCGCTTGAACTCTTGTACAAA--ATGATTGACCATTCTATTGTCAAAGTCCTCACCGCCG 2859
Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271
| | || | || | ||| | | || | ||| | ||||| || | | ||| |
Sbjct 2858 AGATGGGTGTCACCGGCCGTGGACTTGACCTCGAAGATACCATCCTCGATTGTCAATATG 2799
Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331
| ||||| ||| ||||| || | |||||| || | || || || ||
Sbjct 2798 GAGACATCGAAGGTGCCACCGCCAAGATCAAAGATCAAGACGTTACGCTCACAACCTATC 2739
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || | || || |||| |||||| || || ||||| || || || || | |||
Sbjct 2738 TTCTTGTCTAAGCCGTAGGCAATAGCAGCGGCCGTAGGTTCGTTGATTATCCTGAGTACA 2679
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||| ||||| | || ||||| ||||| ||||| | || ||||| || ||
Sbjct 2678 TTCAGACCGGCAATCGTACCAGCATCCTTAGTAGCTTGACGCTGACTGTCGTTGAAGTAG 2619
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509
|| |||||||| | ||| || || || || || || | ||| ||||| || ||||
Sbjct 2618 GCCGGAACAGTGACAACAGCGTCGGTGACAGTCTTGCCGAGATA--CGCTTCCGCGGTTT 2561
Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTC 282567
||||| || | | || ||| || || |||| ||| ||| ||| || | | |
Sbjct 2560 CCTTCATCTTGATGAGAACCATGGAAGAGATTTCTTCGGGATAGAAGGTTTTATCGGCGC 2501
Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627
| ||| || | | | || || || | ||| || | || | |||
Sbjct 2500 CCCT--ATAGTTAACCTTGATCTTCGGCTTCCCTCCTTCGCTAACGACGGTGAAGGACCA 2443
Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687
|| ||||| || || || || | || ||| || ||||| || || ||
Sbjct 2442 ATGCTTCATGTCGTCCTGGACGGGAGCATCCTCGAACCGTCTGCCTATTAAGCGCTTGGC 2383
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|| || | ||||||| | || || | || | |||| || || ||||| || || ||
Sbjct 2382 GTCGAAGACAGTATTGCTAGGGTTCATGGCGACCTGATTCTTTGCAGCATCACCGATTAG 2323
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
|||| || || ||||| | ||||| ||||| || | || ||||||||||| ||
Sbjct 2322 GCGTTCGGTGTCAGTAAAGGCGACATAGCTAGGAGTGGTCCTGTTGCCTTGATCATTTGC 2263
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
||||||||||| || |||| || ||||||| ||||| | || || || | ||
Sbjct 2262 GATAATTTCAACCTTGCCATGCTGGAATACACCAACACATGAGTAGGTAGTGCCGAGGTC 2203
Query 282868 AATACCAATAGCA 282880
||| |||||||||
Sbjct 2202 AATGCCAATAGCA 2190
>seq144730
Length=1378
Score = 91.5 bits (100), Expect = 1e-12
Identities = 122/166 (73%), Gaps = 8/166 (5%)
Strand=Plus/Plus
Query 637135 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 637194
||||| ||||||||||||||||| |||||| ||||||| ||||||||||| || ||||||
Sbjct 653 TCTTCCCCAAATATTGCTAAAGAGATGCATGTTGGACACTTAAGATCAACCATAATTGGT 712
Query 637195 GAATCTATTTGTAG-GGTATTAGAAATGTGT---GGACACGATGTTTATCGTATTAATCA 637250
|| || | ||| |||| || | || || |||| | |||| ||
Sbjct 713 GA---TA-GTCTAGCCCGATTACTTTCGTTTTTGGGGCATTCTGTTACTAAATTTAACCA 768
Query 637251 TGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATT 637296
| | ||||||||||| ||||||||||| ||| | |||||| || ||
Sbjct 769 TATTGGTGATTGGGGTACTCAATTCGGGATGCTTATTGCTCATCTT 814
>seq237940
Length=756
Score = 86.0 bits (94), Expect = 5e-11
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726
||| || || | || || ||||| || | ||||| || ||||| | ||| | ||||
Sbjct 393 TCTGCCGATCAGGCGCTTCGCATCGAACACCGTATTCGTCGGATTCATTGCCACCTGATT 452
Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786
||||| ||||| ||||||||| | ||||| || || || | || || || |||||
Sbjct 453 CTTGGCCGCATCGCCAATCAGACGCTCTGTATCCGTGAAGGCCACGTAACTCGGCGTTGT 512
Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC--TACA 282844
|| || || ||||||||||| || || ||||| || || | || | ||||| | ||
Sbjct 513 ACGGTTTCCCTGATCATTCGCGATGATCTCAACCTTGCCGTGCTGGAAGACACCGGTGCA 572
Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879
| | | | || || || || || ||||| || ||
Sbjct 573 CGAGT--ACGTCGTGCCCAAGTCGATACCGATGGC 605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3725096595297948
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