Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq133394 140 2e-27 seq52071 122 6e-22 seq144730 91.5 1e-12 seq237940 86.0 5e-11 >seq133394 Length=1506 Score = 140 bits (154), Expect = 2e-27 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||||| |||||| || || |||||||| ||||||||||| |||||||| || || | Sbjct 1321 TTTATCAAAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTC 1380 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | ||| |||||| |||| || || ||||| ||||| | ||| | ||| |||||||| || Sbjct 1381 TAAACCGGCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGC 1440 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || ||||||||||| || | ||||| | || ||||| ||| Sbjct 1441 TGGTACAGTAATAACTGCTTGAGTTACCTTTTCTCCAAGATA 1482 Score = 114 bits (126), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 ||||| ||||| | || || || ||||||||||| || ||| | | || |||||||| Sbjct 1328 AAACCATATGCTAATGCAGCAGCTGTTGGTTCATTGATAATTCTTAATACTTCTAAACCG 1387 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 |||||||| ||| || ||||||||| | || || ||||||||||| ||||||||| Sbjct 1388 GCAATTTTTCCAGCGTCCTTAGTTGCTTGACGTTGAGCATCATTAAAATAAGCTGGTACA 1447 Query 86236 GTAATAACTGCTT 86248 ||||||||||||| Sbjct 1448 GTAATAACTGCTT 1460 Score = 89.7 bits (98), Expect = 4e-12 Identities = 265/402 (66%), Gaps = 20/402 (5%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || |||||||| |||||| || || | |||||||| ||||| | |||||| || ||| Sbjct 407 GTAGATTTATCCTTGGCAGTAACTTTCACTATACCATTAGCATCTATATCAAAAGTTACT 466 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 |||||||| || | |||| ||||| || || || || | ||||||| || || Sbjct 467 TCAATTTGTGGACCTCCTCGACTTGCAGGGGGTATACCATCAAGATTAAATTGACCAAGT 526 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 |||||||| | | | || |||||| | |||| | ||||| || || | Sbjct 527 AACTTATTATCAGCGGCCATGTCTCTTTCACCTTGAAAAACTCTAATAGTTACAGCATGT 586 Query 281591 TGATTATCTGAATAAGTTGT--AAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTT 281647 |||||||| | || ||| | | | | ||| | |||||| ||||| || || || Sbjct 587 TGATTATC---CTCAGCTGTAGAGAAAATTTGGCTCTTTTTAGTTGGAATGGTAGTATTA 643 Query 281648 CTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTG 281707 | |||||| | |||| | | || ||| ||||| | ||| | ||| |||||||| Sbjct 644 CGATCAATCAACCTGGTGAATACTCCTCCAAGAGTTTCAATACCTAAAGATAGAGGAGTA 703 Query 281708 ACATCAACTAGGACAATATTTTGAAGTT-TTTCATCAGTTTGACCAACAAGAATAGCTGC 281766 || || | | ||||||| | |||| ||| | | ||| || | | | Sbjct 704 ACGTC--CAACAACAATATAT--CAGTTACTTCTTTA-TTTAAC--------ACTCCACC 750 Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAAC 281808 ||| |||||||| || | |||||| ||||||| ||||| || Sbjct 751 TTGGATAGCAGCTCCTAAGGCAACAACTTCATCTGGATTGAC 792 >seq52071 Length=3253 Score = 122 bits (134), Expect = 6e-22 Identities = 655/1033 (63%), Gaps = 24/1033 (2%) Strand=Plus/Minus Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 ||| || ||||||| || || || |||| |||||| || || || |||||||| || Sbjct 3210 CTTGGGGATACGAGTAGAGCCACCGACTAGTACAATATCGTGAACGGCGGATTTATCGAG 3151 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAAC 281978 |||| ||| ||| ||||| || || || ||| ||| | || | || | | Sbjct 3150 CTTTGCATCGCGTAAGGACTTTTCGACCGGATCCAGAGT-GCTGCGGAAGAGATCGGCAT 3092 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 282038 || || ||||| |||||| || | || | | | | || || || ||| | | | Sbjct 3091 TCAGCTCCTCGAACCTAGCTCGGGTGACAGAGGTGTAAAAGTCTATGCCGTCGTAGAGGG 3032 Query 282039 AATCAACTTCAATCGTAG---TTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 |||||| |||| ||| | | | | | || || ||| | | ||||| ||||||| Sbjct 3031 AATCAATCTCAA-CGTTGGCCTGCGCGCTGGAGCTGAGAGTCCTC--TTAGCTCGTTCAC 2975 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTT 282153 | || ||||| || | ||| | ||| ||| || | | | || | || || || Sbjct 2974 AAGCCGTCCTAAGACGTCGGACTGCTC--GCTTGTTATCAGTGATGTCCTTCTTGTACTT 2917 Query 282154 TCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||| |||| ||| | ||| | || | | ||| ||||| || ||||| || Sbjct 2916 TCGCTTGAACTCTTGTACAAA--ATGATTGACCATTCTATTGTCAAAGTCCTCACCGCCG 2859 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | ||| | | || | ||| | ||||| || | | ||| | Sbjct 2858 AGATGGGTGTCACCGGCCGTGGACTTGACCTCGAAGATACCATCCTCGATTGTCAATATG 2799 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331 | ||||| ||| ||||| || | |||||| || | || || || || Sbjct 2798 GAGACATCGAAGGTGCCACCGCCAAGATCAAAGATCAAGACGTTACGCTCACAACCTATC 2739 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | || || |||| |||||| || || ||||| || || || || | ||| Sbjct 2738 TTCTTGTCTAAGCCGTAGGCAATAGCAGCGGCCGTAGGTTCGTTGATTATCCTGAGTACA 2679 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| ||||| | || ||||| ||||| ||||| | || ||||| || || Sbjct 2678 TTCAGACCGGCAATCGTACCAGCATCCTTAGTAGCTTGACGCTGACTGTCGTTGAAGTAG 2619 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 || |||||||| | ||| || || || || || || | ||| ||||| || |||| Sbjct 2618 GCCGGAACAGTGACAACAGCGTCGGTGACAGTCTTGCCGAGATA--CGCTTCCGCGGTTT 2561 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTC 282567 ||||| || | | || ||| || || |||| ||| ||| ||| || | | | Sbjct 2560 CCTTCATCTTGATGAGAACCATGGAAGAGATTTCTTCGGGATAGAAGGTTTTATCGGCGC 2501 Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627 | ||| || | | | || || || | ||| || | || | ||| Sbjct 2500 CCCT--ATAGTTAACCTTGATCTTCGGCTTCCCTCCTTCGCTAACGACGGTGAAGGACCA 2443 Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 || ||||| || || || || | || ||| || ||||| || || || Sbjct 2442 ATGCTTCATGTCGTCCTGGACGGGAGCATCCTCGAACCGTCTGCCTATTAAGCGCTTGGC 2383 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 || || | ||||||| | || || | || | |||| || || ||||| || || || Sbjct 2382 GTCGAAGACAGTATTGCTAGGGTTCATGGCGACCTGATTCTTTGCAGCATCACCGATTAG 2323 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 |||| || || ||||| | ||||| ||||| || | || ||||||||||| || Sbjct 2322 GCGTTCGGTGTCAGTAAAGGCGACATAGCTAGGAGTGGTCCTGTTGCCTTGATCATTTGC 2263 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 ||||||||||| || |||| || ||||||| ||||| | || || || | || Sbjct 2262 GATAATTTCAACCTTGCCATGCTGGAATACACCAACACATGAGTAGGTAGTGCCGAGGTC 2203 Query 282868 AATACCAATAGCA 282880 ||| ||||||||| Sbjct 2202 AATGCCAATAGCA 2190 >seq144730 Length=1378 Score = 91.5 bits (100), Expect = 1e-12 Identities = 122/166 (73%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 637135 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 637194 ||||| ||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| Sbjct 653 TCTTCCCCAAATATTGCTAAAGAGATGCATGTTGGACACTTAAGATCAACCATAATTGGT 712 Query 637195 GAATCTATTTGTAG-GGTATTAGAAATGTGT---GGACACGATGTTTATCGTATTAATCA 637250 || || | ||| |||| || | || || |||| | |||| || Sbjct 713 GA---TA-GTCTAGCCCGATTACTTTCGTTTTTGGGGCATTCTGTTACTAAATTTAACCA 768 Query 637251 TGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATT 637296 | | ||||||||||| ||||||||||| ||| | |||||| || || Sbjct 769 TATTGGTGATTGGGGTACTCAATTCGGGATGCTTATTGCTCATCTT 814 >seq237940 Length=756 Score = 86.0 bits (94), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 ||| || || | || || ||||| || | ||||| || ||||| | ||| | |||| Sbjct 393 TCTGCCGATCAGGCGCTTCGCATCGAACACCGTATTCGTCGGATTCATTGCCACCTGATT 452 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 ||||| ||||| ||||||||| | ||||| || || || | || || || ||||| Sbjct 453 CTTGGCCGCATCGCCAATCAGACGCTCTGTATCCGTGAAGGCCACGTAACTCGGCGTTGT 512 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC--TACA 282844 || || || ||||||||||| || || ||||| || || | || | ||||| | || Sbjct 513 ACGGTTTCCCTGATCATTCGCGATGATCTCAACCTTGCCGTGCTGGAAGACACCGGTGCA 572 Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | | | | || || || || || ||||| || || Sbjct 573 CGAGT--ACGTCGTGCCCAAGTCGATACCGATGGC 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3725096595297948