Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 185 2e-41
seq32333 185 2e-41
seq270304 168 1e-36
>seq171037
Length=1136
Score = 185 bits (204), Expect = 2e-41
Identities = 168/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
|| || | ||||| ||||||||||||||| ||||||||||| |||| | | || ||||
Sbjct 1000 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 941
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|||||||||||||| ||||| |||| || ||| || || || || |||||||| ||||||
Sbjct 940 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 881
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|| || || ||||| | ||||| | || ||| | | ||| ||||||||||| || |||
Sbjct 880 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 821
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| |||| || || ||||| ||||||||
Sbjct 820 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
Score = 178 bits (196), Expect = 3e-39
Identities = 175/225 (78%), Gaps = 1/225 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || ||||| || |||||||| ||||| ||||| ||||| | || ||
Sbjct 776 ACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCC 717
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| ||||||||||||||||| || || ||||||||||| || || || ||||||||
Sbjct 716 ATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTT 657
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||| | ||||| || || || || ||| | | ||| ||||| | ||| ||
Sbjct 656 GTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAAT 597
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819
||||| || |||| || || |||||||| |||||| ||| |||
Sbjct 596 TGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT-TTAGATT 553
>seq32333
Length=4216
Score = 185 bits (204), Expect = 2e-41
Identities = 168/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
|| || | ||||| ||||||||||||||| ||||||||||| |||| | | || ||||
Sbjct 3776 AGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCT 3835
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|||||||||||||| ||||| |||| || ||| || || || || |||||||| ||||||
Sbjct 3836 TCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCT 3895
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|| || || ||||| | ||||| | || ||| | | ||| ||||||||||| || |||
Sbjct 3896 TGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTC 3955
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| |||| || || ||||| ||||||||
Sbjct 3956 TTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
Score = 176 bits (194), Expect = 9e-39
Identities = 169/217 (78%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || ||||| || |||||||| ||||| ||||| ||||| | || ||
Sbjct 4000 ACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCC 4059
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| ||||||||||||||||| || || ||||||||||| || || || ||||||||
Sbjct 4060 ATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTT 4119
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||| | ||||| || || || || ||| | | ||| ||||| | ||| ||
Sbjct 4120 GTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAAT 4179
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || |||| || || |||||||| ||||||
Sbjct 4180 TGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
>seq270304
Length=645
Score = 168 bits (186), Expect = 1e-36
Identities = 167/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||||| || ||||||||||| || ||||||||||| ||||| || | | |||
Sbjct 89 ACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTACGACC 148
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| || || |||||||| || || || ||||| ||||||| || || ||||||||
Sbjct 149 ATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACCTTCCTT 208
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|||||| |||||||| || |||||||| | |||| | ||||| ||||| | |||||
Sbjct 209 ATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAGGGTTAT 268
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || || || || || ||||| || |||||
Sbjct 269 AGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 977847020418922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |