Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq171037 96.9 2e-15 seq32333 96.9 2e-15 seq157544 91.5 1e-13 >seq171037 Length=1136 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || || || |||||||| | ||| || ||| || | |||||||||||||||| Sbjct 979 TCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAA 920 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || || ||||| || | || | |||||||| || ||||| ||| | | Sbjct 919 ATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTT 860 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 ||| ||||| |||||||| || || | || || || || || || | ||||| ||| Sbjct 859 TCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACA 800 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 799 AAAATCTGCAT 789 Score = 95.1 bits (104), Expect = 8e-15 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | ||| | ||| ||||| |||||| || || Sbjct 799 AAAATCTGCATGCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATA 740 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || || || | | || || | ||||||||| |||||||| | | || Sbjct 739 TTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGT 680 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | |||||| ||||| ||| ||| || | | | || | ||||| Sbjct 679 TGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTTA-CGTTCTCTATTGTGTC 621 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||||||| |||| || || || || || || | ||||| ||||| || ||||| Sbjct 620 ACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCAT 561 >seq32333 Length=4216 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || || || |||||||| | ||| || ||| || | |||||||||||||||| Sbjct 3797 TCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAA 3856 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || || ||||| || | || | |||||||| || ||||| ||| | | Sbjct 3857 ATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTT 3916 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 ||| ||||| |||||||| || || | || || || || || || | ||||| ||| Sbjct 3917 TCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACA 3976 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 3977 AAAATCTGCAT 3987 Score = 95.1 bits (104), Expect = 8e-15 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | ||| | ||| ||||| |||||| || || Sbjct 3977 AAAATCTGCATGCCACCACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATA 4036 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || || || | | || || | ||||||||| |||||||| | | || Sbjct 4037 TTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGT 4096 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | |||||| ||||| ||| ||| || | | | || | ||||| Sbjct 4097 TGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTTA-CGTTCTCTATTGTGTC 4155 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||||||| |||| || || || || || || | ||||| ||||| || ||||| Sbjct 4156 ACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCAT 4215 >seq157544 Length=1252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||||||||| || ||||| |||||||| || || || ||||| | || || | || Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || |||||||| | |||||||||||| | || | || || || || |||||| Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTT 1117 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 |||| |||| || | || ||||| || || || || | ||||| || || || | Sbjct 1116 AGCTTTC-ACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAG 1058 Query 33725 TTAACGTTTTTACAAAGATCTGCATAGTT 33753 | | || ||||| || || ||||| ||| Sbjct 1057 TAAGGGTCTTTACGAATATTTGCATCGTT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327436484300160