Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 129 1e-24
seq32333 123 6e-23
seq270304 86.0 1e-11
>seq171037
Length=1136
Score = 129 bits (142), Expect = 1e-24
Identities = 166/227 (73%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 206152 TAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACT 206211
||||| || |||||||| || |||||| |||||| || || ||||| || || |||
Sbjct 547 TAAAGCAAT-CTAAAATG---CAAATATTTGTCAAAACACTGACTGGAAAGACAATTACT 602
Query 206212 TTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAA 206271
| ||||||||| ||||||| | || |||||| ||||||||||| || |||
Sbjct 603 CTTGAAGTGGAATCAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAA 662
Query 206272 GGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGG 206331
|| ||| || || ||||| ||||| || || ||||| || | |||||||| |||
Sbjct 663 GGTATTCCACCTGATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGG 722
Query 206332 ACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
|| | | |||||||| | ||||||||||| |||||||| |||||
Sbjct 723 ACCCTATCAGATTACAATATTCAGAAAGAGTCAACTCTTCATCTTGT 769
Score = 107 bits (118), Expect = 5e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || || ||||||||||| ||| ||||
Sbjct 792 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGTGAC 851
Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
||||| | || || ||||| ||| || ||||| |||||||||||| || ||| ||
Sbjct 852 ACAGTGGAAAACATCAAAGCTAAA-ATCCAAGATAAAGAAGGAATTCCCCCTGACCAGCA 910
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| || | || || |||||||| || | ||||| | | || || ||||||| || |
Sbjct 911 ACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAATAT 970
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387
|||||||| |||||| | ||||| || | |||||
Sbjct 971 TCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACT 1006
>seq32333
Length=4216
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| |||||| |||||| || || ||||| || || ||| | ||||||||| ||||
Sbjct 4212 CAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAGTGAC 4153
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| | || |||||| ||||||||||| || ||||| ||| || || |||
Sbjct 4152 ACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAA 4093
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| ||||| || || ||||| || | |||||||| ||||| | | |||||||| |
Sbjct 4092 AGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAATATT 4033
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| |||||||| |||||
Sbjct 4032 CAGAAAGAGTCAACTCTTCATCTTGT 4007
Score = 107 bits (118), Expect = 5e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || || ||||||||||| ||| ||||
Sbjct 3984 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGTGAC 3925
Query 206233 ACAGTCGAAT-CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
||||| ||| || ||||| ||| || ||||| |||||||||||| || ||| ||
Sbjct 3924 ACAGTGGAAAACATCAAAGCTAAA-ATCCAAGATAAAGAAGGAATTCCCCCTGACCAGCA 3866
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| || | || || |||||||| || | ||||| | | || || ||||||| || |
Sbjct 3865 ACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAATAT 3806
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387
|||||||| |||||| | ||||| || | |||||
Sbjct 3805 TCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACT 3770
>seq270304
Length=645
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | | ||| || ||||||||||| || || || | ||||||||||| | ||
Sbjct 84 CGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTA 143
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| |||||||| ||||||||||| ||||| ||||||| ||| |||
Sbjct 144 CGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGA 188
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| || || | ||||| ||| | | || ||||||
Sbjct 289 AAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACAAATACTGTCGAAAAT 230
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||| ||||| || ||||| ||| | || ||||| ||||| |||
Sbjct 229 GTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAGCAAAGGCTTATTTTC 170
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| ||||||||| | |||||||| | || | | || || || | || || || |||
Sbjct 169 GCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAATATACAAAAGGAATCT 110
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| || ||| | | |||||
Sbjct 109 ACTCTTCATCTAGTTCTTCGTCTTCG 84
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177029876488558
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |