Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq171037 129 1e-24 seq32333 123 6e-23 seq270304 86.0 1e-11 >seq171037 Length=1136 Score = 129 bits (142), Expect = 1e-24 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 206152 TAAAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACT 206211 ||||| || |||||||| || |||||| |||||| || || ||||| || || ||| Sbjct 547 TAAAGCAAT-CTAAAATG---CAAATATTTGTCAAAACACTGACTGGAAAGACAATTACT 602 Query 206212 TTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAA 206271 | ||||||||| ||||||| | || |||||| ||||||||||| || ||| Sbjct 603 CTTGAAGTGGAATCAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAA 662 Query 206272 GGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGG 206331 || ||| || || ||||| ||||| || || ||||| || | |||||||| ||| Sbjct 663 GGTATTCCACCTGATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGG 722 Query 206332 ACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || | | |||||||| | ||||||||||| |||||||| ||||| Sbjct 723 ACCCTATCAGATTACAATATTCAGAAAGAGTCAACTCTTCATCTTGT 769 Score = 107 bits (118), Expect = 5e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || || ||||||||||| ||| |||| Sbjct 792 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGTGAC 851 Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||||| | || || ||||| ||| || ||||| |||||||||||| || ||| || Sbjct 852 ACAGTGGAAAACATCAAAGCTAAA-ATCCAAGATAAAGAAGGAATTCCCCCTGACCAGCA 910 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | || || |||||||| || | ||||| | | || || ||||||| || | Sbjct 911 ACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAATAT 970 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||||||| |||||| | ||||| || | ||||| Sbjct 971 TCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACT 1006 >seq32333 Length=4216 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| || || ||||| || || ||| | ||||||||| |||| Sbjct 4212 CAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAGTGAC 4153 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| ||||||||||| || ||||| ||| || || ||| Sbjct 4152 ACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAA 4093 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||| || || ||||| || | |||||||| ||||| | | |||||||| | Sbjct 4092 AGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAATATT 4033 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||| ||||| Sbjct 4032 CAGAAAGAGTCAACTCTTCATCTTGT 4007 Score = 107 bits (118), Expect = 5e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || || ||||||||||| ||| |||| Sbjct 3984 CAGATTTTTGTTAAAACTCTGACGGGCAAGACAATTACTTTGGAAGTCGAATCAAGTGAC 3925 Query 206233 ACAGTCGAAT-CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||||| ||| || ||||| ||| || ||||| |||||||||||| || ||| || Sbjct 3924 ACAGTGGAAAACATCAAAGCTAAA-ATCCAAGATAAAGAAGGAATTCCCCCTGACCAGCA 3866 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | || || |||||||| || | ||||| | | || || ||||||| || | Sbjct 3865 ACGATTAATTTTTGCCGGAAAACAACTAGAAGACAGTCGTACATTATCCGATTATAATAT 3806 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||||||| |||||| | ||||| || | ||||| Sbjct 3805 TCAGAAAGAATCTACTTTGCACCTGGTGCTAAGACT 3770 >seq270304 Length=645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| || ||||||||||| || || || | ||||||||||| | || Sbjct 84 CGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGTA 143 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||| ||||||||||| ||||| ||||||| ||| ||| Sbjct 144 CGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGA 188 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || | ||||| ||| | | || |||||| Sbjct 289 AAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACAAATACTGTCGAAAAT 230 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| | || ||||| ||||| ||| Sbjct 229 GTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAGCAAAGGCTTATTTTC 170 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | |||||||| | || | | || || || | || || || ||| Sbjct 169 GCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAATATACAAAAGGAATCT 110 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || ||| | | ||||| Sbjct 109 ACTCTTCATCTAGTTCTTCGTCTTCG 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177029876488558