Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq110960 127 2e-24 seq75644 118 1e-21 seq157544 111 1e-19 seq171037 82.4 7e-11 seq32333 82.4 7e-11 >seq110960 Length=1818 Score = 127 bits (140), Expect = 2e-24 Identities = 342/511 (67%), Gaps = 13/511 (3%) Strand=Plus/Plus Query 46764 TGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA-CGCT 46822 || || | ||||||||| ||||||||| | | ||||| | | | | | | || || | Sbjct 727 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 785 Query 46823 GGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGC 46882 |||||||| || | || || || | ||||||| || || ||||| ||||||||||| Sbjct 786 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 845 Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942 | || |||| |||| | ||| | ||||| ||| |||| ||||| || || | Sbjct 846 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 905 Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTC-TCTATTACAAGACGCGCG 47001 || ||||||||||| || ||||| |||||||| || | ||| || ||| || Sbjct 906 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTT-CAAACATATCG 964 Query 47002 TGAATGAGAAATTAAACTCGGACACGATCCTGAGC-ATGTTTAGGGAGGCGGTGAGCATC 47060 |||| || || ||| ||| | || || || | |||||| || || Sbjct 965 TGAAAAAGCCCGATAA---GGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATA 1020 Query 47061 GAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT 47120 ||||||| || |||| || ||| | |||||| || | ||||||||| | Sbjct 1021 GAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGATATG 1080 Query 47121 ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA-A 47179 |||||| || | || ||||| || ||||| || || |||| || | ||| | Sbjct 1081 ATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTA--CGAGA 1138 Query 47180 ATATTT-TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238 | |||| |||||| ||||| ||||| |||||| | || || ||| |||||||||||| Sbjct 1139 AGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAA 1198 Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | || || || ||||| || || || || || Sbjct 1199 CGAACTTCTTTGAGAAGCGTGTTGGGGAATA 1229 >seq75644 Length=2520 Score = 118 bits (130), Expect = 1e-21 Identities = 340/511 (67%), Gaps = 13/511 (3%) Strand=Plus/Minus Query 46764 TGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA-CGCT 46822 || || | ||||||||| ||||||||| | | ||||| | | | | | | || || | Sbjct 1092 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 1034 Query 46823 GGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGC 46882 |||||||| || | || || || | ||||||| || || ||||| ||||||||||| Sbjct 1033 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 974 Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942 | || |||| |||| | ||| | ||||| ||| |||| ||||| || || | Sbjct 973 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 914 Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTC-TCTATTACAAGACGCGCG 47001 || ||||||||||| || ||||| |||||||| || | ||| || ||| || Sbjct 913 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTT-CAAACATATCG 855 Query 47002 TGAATGAGAAATTAAACTCGGACACGATCCTGAGC-ATGTTTAGGGAGGCGGTGAGCATC 47060 |||| || || ||| ||| | || || || | |||||| || || Sbjct 854 TGAAAAAGCCCGATAA---GGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATA 799 Query 47061 GAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT 47120 ||||||| || |||| || ||| | ||||| || | ||||||||| | Sbjct 798 GAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATG 739 Query 47121 ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA-A 47179 |||||| || | || ||||| || ||||| || | |||| || | ||| | Sbjct 738 ATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGGTTA--CGAGA 681 Query 47180 ATATTT-TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238 | |||| |||||| ||||| ||||| |||||| | || || ||| |||||||||||| Sbjct 680 AGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAA 621 Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | || || || ||||| || || || || || Sbjct 620 CAAACTTCTTTGAGAAGCGTGTTGGGGAATA 590 >seq157544 Length=1252 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||||| |||| || ||||||||||||||||| || || || ||| || ||||| Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 ||| || | | | ||||||||||| ||||| || || ||||| || ||||| |||||| Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTT 1117 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 ||||| | || | |||||| ||| ||| || |||| || | || || ||||| Sbjct 1116 AGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGT 1057 Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123 || || |||| ||| || ||||| Sbjct 1056 AAGGGTCTTTACGAATATTTGCAT 1033 >seq171037 Length=1136 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| ||||| || || ||| | ||||| ||||| || ||||| |||| | Sbjct 982 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 923 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| || || || || || || || ||||||||||| ||||| ||| | Sbjct 922 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 863 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | |||||| || || | | || ||||| | || | || || || ||||||||||| Sbjct 862 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 803 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 802 ACAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| ||||| || || ||| | ||||| ||||| || ||||| |||| | Sbjct 3794 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 3853 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| || || || || || || || ||||||||||| ||||| ||| | Sbjct 3854 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 3913 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | |||||| || || | | || ||||| | || | || || || ||||||||||| Sbjct 3914 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 3973 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 3974 ACAAAAATCTGCATG 3988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474726214619280