Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq110960 127 2e-24
seq75644 118 1e-21
seq157544 111 1e-19
seq171037 82.4 7e-11
seq32333 82.4 7e-11
>seq110960
Length=1818
Score = 127 bits (140), Expect = 2e-24
Identities = 342/511 (67%), Gaps = 13/511 (3%)
Strand=Plus/Plus
Query 46764 TGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA-CGCT 46822
|| || | ||||||||| ||||||||| | | ||||| | | | | | | || || |
Sbjct 727 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 785
Query 46823 GGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGC 46882
|||||||| || | || || || | ||||||| || || ||||| |||||||||||
Sbjct 786 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 845
Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942
| || |||| |||| | ||| | ||||| ||| |||| ||||| || || |
Sbjct 846 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 905
Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTC-TCTATTACAAGACGCGCG 47001
|| ||||||||||| || ||||| |||||||| || | ||| || ||| ||
Sbjct 906 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTT-CAAACATATCG 964
Query 47002 TGAATGAGAAATTAAACTCGGACACGATCCTGAGC-ATGTTTAGGGAGGCGGTGAGCATC 47060
|||| || || ||| ||| | || || || | |||||| || ||
Sbjct 965 TGAAAAAGCCCGATAA---GGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATA 1020
Query 47061 GAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT 47120
||||||| || |||| || ||| | |||||| || | ||||||||| |
Sbjct 1021 GAAAAGGCTTTCTTTAATGAGGCCTTACCCGTCAAACTGATTGGCATGAACTGTGATATG 1080
Query 47121 ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA-A 47179
|||||| || | || ||||| || ||||| || || |||| || | ||| |
Sbjct 1081 ATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTACGAGCTTGGTTA--CGAGA 1138
Query 47180 ATATTT-TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238
| |||| |||||| ||||| ||||| |||||| | || || ||| ||||||||||||
Sbjct 1139 AGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAA 1198
Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
| || || || ||||| || || || || ||
Sbjct 1199 CGAACTTCTTTGAGAAGCGTGTTGGGGAATA 1229
>seq75644
Length=2520
Score = 118 bits (130), Expect = 1e-21
Identities = 340/511 (67%), Gaps = 13/511 (3%)
Strand=Plus/Minus
Query 46764 TGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA-CGCT 46822
|| || | ||||||||| ||||||||| | | ||||| | | | | | | || || |
Sbjct 1092 TGTGTACACAAAAAGGCGCAGTGGGCCCTTGACTGGATTG-GTGATACAAAGTCAACGTT 1034
Query 46823 GGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGC 46882
|||||||| || | || || || | ||||||| || || ||||| |||||||||||
Sbjct 1033 TGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTTTGC 974
Query 46883 CGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTT 46942
| || |||| |||| | ||| | ||||| ||| |||| ||||| || || |
Sbjct 973 GTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAATGAACT 914
Query 46943 GATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTC-TCTATTACAAGACGCGCG 47001
|| ||||||||||| || ||||| |||||||| || | ||| || ||| ||
Sbjct 913 TATTAGTCGCGACGAAGGCCTTCACACCGACTTTGCTTGCCTTCTGTT-CAAACATATCG 855
Query 47002 TGAATGAGAAATTAAACTCGGACACGATCCTGAGC-ATGTTTAGGGAGGCGGTGAGCATC 47060
|||| || || ||| ||| | || || || | |||||| || ||
Sbjct 854 TGAAAAAGCCCGATAA---GGA-ACGTGTTTATGCTATATTCAAGGAGGCATTGGAGATA 799
Query 47061 GAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT 47120
||||||| || |||| || ||| | ||||| || | ||||||||| |
Sbjct 798 GAAAAGGCTTTCTTTAATGAGGCCTTACCCGTAAAACTGATTGGCATGAACTGTGATATG 739
Query 47121 ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGA-A 47179
|||||| || | || ||||| || ||||| || | |||| || | ||| |
Sbjct 738 ATGTGCCGTTACCTCGAATTTGTTGCCGATCGCTTGCTATACGAGCTTGGTTA--CGAGA 681
Query 47180 ATATTT-TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAA 47238
| |||| |||||| ||||| ||||| |||||| | || || ||| ||||||||||||
Sbjct 680 AGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGCAAAA 621
Query 47239 CCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
| || || || ||||| || || || || ||
Sbjct 620 CAAACTTCTTTGAGAAGCGTGTTGGGGAATA 590
>seq157544
Length=1252
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979
||||| |||| || ||||||||||||||||| || || || ||| || |||||
Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177
Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039
||| || | | | ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATTTT 1117
Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099
||||| | || | |||||| ||| ||| || |||| || | || || |||||
Sbjct 1116 AGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAGT 1057
Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123
|| || |||| ||| || |||||
Sbjct 1056 AAGGGTCTTTACGAATATTTGCAT 1033
>seq171037
Length=1136
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| ||||| ||||| || || ||| | ||||| ||||| || ||||| |||| |
Sbjct 982 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 923
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| |||| || || || || || || || ||||||||||| ||||| ||| |
Sbjct 922 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 863
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| |||||| || || | | || ||||| | || | || || || |||||||||||
Sbjct 862 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 803
Query 132110 ATGAAAATCTGCATG 132124
| ||||||||||||
Sbjct 802 ACAAAAATCTGCATG 788
>seq32333
Length=4216
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| ||||| ||||| || || ||| | ||||| ||||| || ||||| |||| |
Sbjct 3794 GATTCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCA 3853
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| |||| || || || || || || || ||||||||||| ||||| ||| |
Sbjct 3854 AAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGATTTTAGCTTTGATG 3913
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| |||||| || || | | || ||||| | || | || || || |||||||||||
Sbjct 3914 TTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTA 3973
Query 132110 ATGAAAATCTGCATG 132124
| ||||||||||||
Sbjct 3974 ACAAAAATCTGCATG 3988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 474726214619280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |