Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq171037 104 2e-17 seq270304 102 7e-17 seq110960 102 7e-17 seq75644 102 7e-17 seq32333 102 7e-17 seq150668 95.1 1e-14 >seq171037 Length=1136 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| |||||| | || ||||| | || || | ||||| ||| | Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | || || || ||| | ||||| || ||| || || || ||||| || || ||| Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 || ||||| || |||| | || |||||||||||||||| || | | ||| |||| Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCA--GATT 735 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||||| ||||| || || ||||| | ||| Sbjct 736 ACAATATTCAGAAAGAGTCAACTCTTCATCTTGTG 770 >seq270304 Length=645 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||||||||||||| | || || | ||||| ||| | | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||| | || || ||| || ||||| || ||||| || | |||||| Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || |||| || || || || || ||||||| | | | | || || ||| Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| ||||| || ||||| |||| Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGT 96 >seq110960 Length=1818 Score = 102 bits (112), Expect = 7e-17 Identities = 353/545 (65%), Gaps = 22/545 (4%) Strand=Plus/Minus Query 110035 GTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCAT 110094 |||||| || ||||| || || || || || ||||||||||||| || ||||| | ||| Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171 Query 110095 AAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCG 110154 ||| || || ||||| ||| || | || ||||| || | ||| | ||||| || Sbjct 1170 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAGCAAGCG 1111 Query 110155 ATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214 ||| || |||||||| | || |||||| | ||||||||| | || || Sbjct 1110 ATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTGAC 1051 Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATA--CTC 110272 |||| || | |||| ||| ||||||| || || | ||||| ||| ||| | Sbjct 1050 GGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCATA 991 Query 110273 AACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAG 110332 ||||| | ||||| |||| ||| || |||| | || | ||||| Sbjct 990 AACAC--GTTCCTTATCGGGCTTTTTC---ACG---ATATGT---TTGAACAGAAGGCAA 942 Query 110333 GCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCG 110392 ||||| || ||||| | ||||| || | | ||| ||||| |||||| | ||||| || Sbjct 941 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 882 Query 110393 GGTA-GAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCGGAAA-- 110449 || | || || || || | | | || | |||||||| ||||||| Sbjct 881 GGCATCAGGCCACGCTT------CTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 828 Query 110450 AATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATTTATTT 110509 || |||||||||| ||||| || | || ||||||||||| || | | ||| Sbjct 827 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCA 768 Query 110510 TCTATCCACTTTTGAGCCCAAGCCGCCTTCCGTTTAACACTATCGATGTGCTCGATGGCA 110569 | ||||| | | ||||| |||||| | |||| ||||| || | ||||||| Sbjct 767 CCAATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTCGTGATGGCA 708 Query 110570 TTCAA 110574 || || Sbjct 707 TTAAA 703 >seq75644 Length=2520 Score = 102 bits (112), Expect = 7e-17 Identities = 353/545 (65%), Gaps = 22/545 (4%) Strand=Plus/Plus Query 110035 GTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCAT 110094 |||||| || ||||| || || || || || ||||||||||||| || ||||| | ||| Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648 Query 110095 AAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCG 110154 ||| || || ||||| ||| || | || ||||| || | ||| ||||||| || Sbjct 649 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAGCAAGCG 708 Query 110155 ATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214 ||| || |||||||| | || |||||| | ||||||||| | || || Sbjct 709 ATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTTAC 768 Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATA--CTC 110272 |||| || | |||| ||| ||||||| || || | ||||| ||| ||| | Sbjct 769 GGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCATA 828 Query 110273 AACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAG 110332 ||||| | ||||| |||| ||| || |||| | || | ||||| Sbjct 829 AACAC--GTTCCTTATCGGGCTTTTTC---ACG---ATATGT---TTGAACAGAAGGCAA 877 Query 110333 GCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCG 110392 ||||| || ||||| | ||||| || | | ||| ||||| |||||| | ||||| || Sbjct 878 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 937 Query 110393 GGTA-GAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCGGAAA-- 110449 || | || || || || | | | || | |||||||| ||||||| Sbjct 938 GGCATCAGGCCACGCTT------CTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 991 Query 110450 AATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATTTATTT 110509 || |||||||||| ||||| || | || ||||||||||| || | | ||| Sbjct 992 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCA 1051 Query 110510 TCTATCCACTTTTGAGCCCAAGCCGCCTTCCGTTTAACACTATCGATGTGCTCGATGGCA 110569 | ||||| | | ||||| |||||| | |||| ||||| || ||||||| Sbjct 1052 CCAATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTTGTGATGGCA 1111 Query 110570 TTCAA 110574 || || Sbjct 1112 TTAAA 1116 >seq32333 Length=4216 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || ||||| | || || | ||||| ||| | | Sbjct 4215 ATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAGT 4156 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | ||||| || ||| || || || ||||| || || ||||| Sbjct 4155 GACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 4096 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||||| || |||| | || |||||||||||||||| || | | |||| |||||| Sbjct 4095 CAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAG--ATTACA 4038 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||| ||||| || || ||||| | ||| Sbjct 4037 ATATTCAGAAAGAGTCAACTCTTCATCTTGTG 4006 >seq150668 Length=1318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 110029 CCGCTTGTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATT 110088 || || ||||||||| || || || ||||||||||| ||||||||||| ||||||||||| Sbjct 1167 CCTCTGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATT 1108 Query 110089 ATTCATAAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAG 110148 | |||||| || || ||||| | | ||| | || | ||| || | ||| | || Sbjct 1107 TTCCATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAG 1048 Query 110149 CAATCGATCCGCCACAAATTCAATATA 110175 | ||||| |||||||| || || || Sbjct 1047 AAGACGATCAGCCACAAACTCTATGTA 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443334062775360