Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 104 2e-17
seq270304 102 7e-17
seq110960 102 7e-17
seq75644 102 7e-17
seq32333 102 7e-17
seq150668 95.1 1e-14
>seq171037
Length=1136
Score = 104 bits (114), Expect = 2e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231
|| |||||| | ||||| |||||| | || ||||| | || || | ||||| ||| |
Sbjct 558 AAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCA 617
Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291
| || || || ||| | ||||| || ||| || || || ||||| || || |||
Sbjct 618 AGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGAT 677
Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349
|| ||||| || |||| | || |||||||||||||||| || | | ||| ||||
Sbjct 678 CAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCA--GATT 735
Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||||||| ||||| || || ||||| | |||
Sbjct 736 ACAATATTCAGAAAGAGTCAACTCTTCATCTTGTG 770
>seq270304
Length=645
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| |||||||||||||||||| | || || | ||||| ||| | |
Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| |||| | || || ||| || ||||| || ||||| || | ||||||
Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| || |||| || || || || || ||||||| | | | | || || |||
Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| ||||| ||||| || ||||| ||||
Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGT 96
>seq110960
Length=1818
Score = 102 bits (112), Expect = 7e-17
Identities = 353/545 (65%), Gaps = 22/545 (4%)
Strand=Plus/Minus
Query 110035 GTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCAT 110094
|||||| || ||||| || || || || || ||||||||||||| || ||||| | |||
Sbjct 1230 GTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATTCTCCAT 1171
Query 110095 AAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCG 110154
||| || || ||||| ||| || | || ||||| || | ||| | ||||| ||
Sbjct 1170 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACAGCAAGCG 1111
Query 110155 ATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214
||| || |||||||| | || |||||| | ||||||||| | || ||
Sbjct 1110 ATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCAGTTTGAC 1051
Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATA--CTC 110272
|||| || | |||| ||| ||||||| || || | ||||| ||| ||| |
Sbjct 1050 GGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCATA 991
Query 110273 AACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAG 110332
||||| | ||||| |||| ||| || |||| | || | |||||
Sbjct 990 AACAC--GTTCCTTATCGGGCTTTTTC---ACG---ATATGT---TTGAACAGAAGGCAA 942
Query 110333 GCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCG 110392
||||| || ||||| | ||||| || | | ||| ||||| |||||| | ||||| ||
Sbjct 941 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 882
Query 110393 GGTA-GAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCGGAAA-- 110449
|| | || || || || | | | || | |||||||| |||||||
Sbjct 881 GGCATCAGGCCACGCTT------CTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 828
Query 110450 AATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATTTATTT 110509
|| |||||||||| ||||| || | || ||||||||||| || | | |||
Sbjct 827 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCA 768
Query 110510 TCTATCCACTTTTGAGCCCAAGCCGCCTTCCGTTTAACACTATCGATGTGCTCGATGGCA 110569
| ||||| | | ||||| |||||| | |||| ||||| || | |||||||
Sbjct 767 CCAATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTCGTGATGGCA 708
Query 110570 TTCAA 110574
|| ||
Sbjct 707 TTAAA 703
>seq75644
Length=2520
Score = 102 bits (112), Expect = 7e-17
Identities = 353/545 (65%), Gaps = 22/545 (4%)
Strand=Plus/Plus
Query 110035 GTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCAT 110094
|||||| || ||||| || || || || || ||||||||||||| || ||||| | |||
Sbjct 589 GTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCAT 648
Query 110095 AAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCG 110154
||| || || ||||| ||| || | || ||||| || | ||| ||||||| ||
Sbjct 649 AAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAGCAAGCG 708
Query 110155 ATCCGCCACAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214
||| || |||||||| | || |||||| | ||||||||| | || ||
Sbjct 709 ATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTTAC 768
Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATA--CTC 110272
|||| || | |||| ||| ||||||| || || | ||||| ||| ||| |
Sbjct 769 GGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCATA 828
Query 110273 AACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAG 110332
||||| | ||||| |||| ||| || |||| | || | |||||
Sbjct 829 AACAC--GTTCCTTATCGGGCTTTTTC---ACG---ATATGT---TTGAACAGAAGGCAA 877
Query 110333 GCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCG 110392
||||| || ||||| | ||||| || | | ||| ||||| |||||| | ||||| ||
Sbjct 878 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 937
Query 110393 GGTA-GAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCGGAAA-- 110449
|| | || || || || | | | || | |||||||| |||||||
Sbjct 938 GGCATCAGGCCACGCTT------CTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAG 991
Query 110450 AATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATTTATTT 110509
|| |||||||||| ||||| || | || ||||||||||| || | | |||
Sbjct 992 AAGACTCCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCA 1051
Query 110510 TCTATCCACTTTTGAGCCCAAGCCGCCTTCCGTTTAACACTATCGATGTGCTCGATGGCA 110569
| ||||| | | ||||| |||||| | |||| ||||| || |||||||
Sbjct 1052 CCAATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTTGTGATGGCA 1111
Query 110570 TTCAA 110574
|| ||
Sbjct 1112 TTAAA 1116
>seq32333
Length=4216
Score = 102 bits (112), Expect = 7e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| |||||| | || ||||| | || || | ||||| ||| | |
Sbjct 4215 ATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAGT 4156
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || ||| | ||||| || ||| || || || ||||| || || |||||
Sbjct 4155 GACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 4096
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352
||||| || |||| | || |||||||||||||||| || | | |||| ||||||
Sbjct 4095 CAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAG--ATTACA 4038
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||||||| ||||| || || ||||| | |||
Sbjct 4037 ATATTCAGAAAGAGTCAACTCTTCATCTTGTG 4006
>seq150668
Length=1318
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 110029 CCGCTTGTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATT 110088
|| || ||||||||| || || || ||||||||||| ||||||||||| |||||||||||
Sbjct 1167 CCTCTGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATT 1108
Query 110089 ATTCATAAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAG 110148
| |||||| || || ||||| | | ||| | || | ||| || | ||| | ||
Sbjct 1107 TTCCATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGACAG 1048
Query 110149 CAATCGATCCGCCACAAATTCAATATA 110175
| ||||| |||||||| || || ||
Sbjct 1047 AAGACGATCAGCCACAAACTCTATGTA 1021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443334062775360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |