Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq268294 167 3e-35
seq273246 104 3e-16
seq110960 100 4e-15
seq75644 100 4e-15
seq181417 98.7 1e-14
>seq268294
Length=651
Score = 167 bits (184), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||| ||||||||||||||||||||| |||| |||| || |||| |||||
Sbjct 238 TACAAAGTGCTCAAGCAGGTGCACCCCGATACCGG-----CATC-TCTTCCAAGGCCATG 185
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| ||||| ||||| | |||| ||||||| || ||| |||
Sbjct 184 AGCATCATGAACTCCTTTGTTAACGATGTCTTCGAGCGCATCGCAGGGGAAGCCTCCCGC 125
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | || |||||||||| ||| ||| | | || ||||||||||||||||| |||
Sbjct 124 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCCGC 65
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| || ||| || || ||||||| ||||||||| |||||||||||||
Sbjct 64 CTGCTCTTGCCTGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 16
>seq273246
Length=635
Score = 104 bits (114), Expect = 3e-16
Identities = 164/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||| ||||| ||| ||||| |||||| |||| ||| ||| ||| ||
Sbjct 262 ATCTATAAGGTTCTCCGCCAGGTCCACCCCGACACCGG-----CATT-TCCTCTAAGGCC 315
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||| || || || |||||||| |||| ||||| | | |||||||| |
Sbjct 316 ATGTCTATCATGAATTCTTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGGCCAGC 375
Query 725031 CGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
||| |||| | || ||||||| ||||| ||| || || ||| | ||||| | |
Sbjct 376 CGCTTGGCTCACTACAACAAGAAGTCAACA--ATCACCAGTCGTGAGGTGCAGACTTCAG 433
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|||| || | | | || || ||||||| ||| || || |||||||||||
Sbjct 434 TGCGTCTCCTACTCCCTGGAGAGCTGGCCAAGCATGCAGTGTCCGAGGGCAC 485
>seq110960
Length=1818
Score = 100 bits (110), Expect = 4e-15
Identities = 110/141 (78%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231
||||||||||| | | | |||||| || |||| || |||| || || ||||||||
Sbjct 784 TTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTT- 842
Query 1456232 TGCGCC-ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290
|||| | || |||||||| |||||||| ||||| ||||| || ||| ||| ||||| |
Sbjct 843 TGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGG-CTTGACCTTCAGCAATG 901
Query 1456291 AATTTATCAGTCGCGACGAAG 1456311
|| |||| |||||||||||||
Sbjct 902 AACTTATTAGTCGCGACGAAG 922
>seq75644
Length=2520
Score = 100 bits (110), Expect = 4e-15
Identities = 110/141 (78%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231
||||||||||| | | | |||||| || |||| || |||| || || ||||||||
Sbjct 1035 TTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTT- 977
Query 1456232 TGCGCC-ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290
|||| | || |||||||| |||||||| ||||| ||||| || ||| ||| ||||| |
Sbjct 976 TGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGG-CTTGACCTTCAGCAATG 918
Query 1456291 AATTTATCAGTCGCGACGAAG 1456311
|| |||| |||||||||||||
Sbjct 917 AACTTATTAGTCGCGACGAAG 897
>seq181417
Length=1058
Score = 98.7 bits (108), Expect = 1e-14
Identities = 164/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||| ||||| ||| ||||| |||||| |||| | ||||| || || ||
Sbjct 797 ATCTATAAGGTTCTCCGCCAGGTCCACCCCGACACCG---GCATTTCCTCTAA--AG-CC 744
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||| || || || ||||| || |||| ||||| | | |||||||| |
Sbjct 743 ATGTCTATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATTGCCGCCGAGGCCAGC 684
Query 725031 CGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
||| |||| | || ||||||| ||||| ||| || || ||| | ||||| | |
Sbjct 683 CGCTTGGCTCACTACAACAAGAAGTCAACA--ATCACCAGTCGTGAGGTGCAGACTTCAG 626
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|||| || | | | || || ||||||| ||| || || |||||||||||
Sbjct 625 TGCGTCTCCTACTCCCTGGAGAGCTGGCCAAGCATGCAGTGTCCGAGGGCAC 574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7147294031360476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |