Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq268294 167 3e-35 seq273246 104 3e-16 seq110960 100 4e-15 seq75644 100 4e-15 seq181417 98.7 1e-14 >seq268294 Length=651 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||||||||||||||||||| |||| |||| || |||| ||||| Sbjct 238 TACAAAGTGCTCAAGCAGGTGCACCCCGATACCGG-----CATC-TCTTCCAAGGCCATG 185 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| ||||| | |||| ||||||| || ||| ||| Sbjct 184 AGCATCATGAACTCCTTTGTTAACGATGTCTTCGAGCGCATCGCAGGGGAAGCCTCCCGC 125 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | || ||||||||||||||||| ||| Sbjct 124 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTCCGC 65 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || ||| || || ||||||| ||||||||| ||||||||||||| Sbjct 64 CTGCTCTTGCCTGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 16 >seq273246 Length=635 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| ||||| ||| ||||| |||||| |||| ||| ||| ||| || Sbjct 262 ATCTATAAGGTTCTCCGCCAGGTCCACCCCGACACCGG-----CATT-TCCTCTAAGGCC 315 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || || |||||||| |||| ||||| | | |||||||| | Sbjct 316 ATGTCTATCATGAATTCTTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGGCCAGC 375 Query 725031 CGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| |||| | || ||||||| ||||| ||| || || ||| | ||||| | | Sbjct 376 CGCTTGGCTCACTACAACAAGAAGTCAACA--ATCACCAGTCGTGAGGTGCAGACTTCAG 433 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || | | | || || ||||||| ||| || || ||||||||||| Sbjct 434 TGCGTCTCCTACTCCCTGGAGAGCTGGCCAAGCATGCAGTGTCCGAGGGCAC 485 >seq110960 Length=1818 Score = 100 bits (110), Expect = 4e-15 Identities = 110/141 (78%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231 ||||||||||| | | | |||||| || |||| || |||| || || |||||||| Sbjct 784 TTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTT- 842 Query 1456232 TGCGCC-ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||| | || |||||||| |||||||| ||||| ||||| || ||| ||| ||||| | Sbjct 843 TGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGG-CTTGACCTTCAGCAATG 901 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 || |||| ||||||||||||| Sbjct 902 AACTTATTAGTCGCGACGAAG 922 >seq75644 Length=2520 Score = 100 bits (110), Expect = 4e-15 Identities = 110/141 (78%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231 ||||||||||| | | | |||||| || |||| || |||| || || |||||||| Sbjct 1035 TTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGGCAGTTT- 977 Query 1456232 TGCGCC-ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||| | || |||||||| |||||||| ||||| ||||| || ||| ||| ||||| | Sbjct 976 TGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGG-CTTGACCTTCAGCAATG 918 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 || |||| ||||||||||||| Sbjct 917 AACTTATTAGTCGCGACGAAG 897 >seq181417 Length=1058 Score = 98.7 bits (108), Expect = 1e-14 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| ||||| ||| ||||| |||||| |||| | ||||| || || || Sbjct 797 ATCTATAAGGTTCTCCGCCAGGTCCACCCCGACACCG---GCATTTCCTCTAA--AG-CC 744 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || || ||||| || |||| ||||| | | |||||||| | Sbjct 743 ATGTCTATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATTGCCGCCGAGGCCAGC 684 Query 725031 CGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| |||| | || ||||||| ||||| ||| || || ||| | ||||| | | Sbjct 683 CGCTTGGCTCACTACAACAAGAAGTCAACA--ATCACCAGTCGTGAGGTGCAGACTTCAG 626 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || | | | || || ||||||| ||| || || ||||||||||| Sbjct 625 TGCGTCTCCTACTCCCTGGAGAGCTGGCCAAGCATGCAGTGTCCGAGGGCAC 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7147294031360476