Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq150668 224 1e-53 seq75644 224 1e-53 seq110960 215 7e-51 seq93010 203 4e-47 >seq150668 Length=1318 Score = 224 bits (248), Expect = 1e-53 Identities = 317/439 (72%), Gaps = 16/439 (4%) Strand=Plus/Minus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 |||||||| |||||||| |||||||||||||| |||||||| |||| |||||||||||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 39389 ATGAAATCAAACGGATT-----AGTTGCATTATAtttttttttAAATCCTAATTCTGAAA 39443 || |||||||||||||| |||| || || || || ||| || | ||| || | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAA---ATCTTCTTGTAA--CCAAGTTCAGACA 1049 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 | | ||| || ||||| |||||||| ||| | | |||||||| || |||| Sbjct 1048 GAAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGA 989 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | | || || | ||| || || ||||| |||| || || | ||| ||||| |||| Sbjct 988 GACTGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTA 929 Query 39564 TCGATGTTACTACCTCATCACT--CGGTGGATGCAATAA-ATGTTTAAACATTAAGCAGG 39620 | || | |||| || || |||| |||||| | ||| ||||| | | ||| | Sbjct 928 TAGAATGGAT--CCTCTTCTCTTCCGGTTT-TGCAATGATATGCTTAAATAGGAGGCAAG 872 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 |||| || ||||| || |||||||||| ||| || | || || || ||||| || | Sbjct 871 CGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCCGG 812 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 |||| |||||||||||||| ||||||||||| || ||||| || || ||||| | | Sbjct 811 GCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAACAC 752 Query 39741 CTTCTACTGCTGCAAATGC 39759 ||||||| |||||||| || Sbjct 751 CTTCTACAGCTGCAAAAGC 733 >seq75644 Length=2520 Score = 224 bits (248), Expect = 1e-53 Identities = 603/914 (66%), Gaps = 50/914 (5%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 |||||||||||| ||||| || ||||| || || || |||||||| || | || ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATT--ATAtttttttttAAATCCTAATTCTGAA 39442 ||||| |||||||| ||||| ||||| | || || | ||| || | || | Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAA--CCAAGCTCGTAT 700 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | ||| | ||| ||||||||||| | ||| |||||| ||||| ||||| || || Sbjct 701 AGCAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATC 760 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 ||||| || |||| ||||| | | || | ||||| || || | ||||| | | | Sbjct 761 AGTTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 820 Query 39563 ATCGATGTTAC---TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG 39619 || | || | ||| ||| || | || | |||||| |||| | ||| Sbjct 821 ATAGCATAAACACGTTCCTTATC---GGGCTTTTTCACGATATGTTTGAACAGAAGGCAA 877 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || ||||| || ||||| || || | |||||| | ||| || || || | || Sbjct 878 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 937 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||| || |||||||| || ||||||||||| | |||||| || |||||||||| Sbjct 938 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 997 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTC----TCCGT--AACTTGTATCATTATGT 39793 ||||| | ||| ||||| || ||| | ||| ||| | |||||||| | Sbjct 998 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCA--- 1054 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATT 39852 ||||| | | ||||| | || || || | ||||||| | |||| | || ||||| Sbjct 1055 ATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAA-TCGAGGTTTGTGATGGCATT 1113 Query 39853 A---AAGAGAT-------AATGTT---TTT-------CAT-------CACT--ATCTTTA 39883 | |||| || || || ||| ||| |||| |||| Sbjct 1114 AAACAAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGG 1173 Query 39884 ACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGA 39943 | ||||||||| || | |||| |||||| || || || || ||||| || |||||||| Sbjct 1174 ATATATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGC 1233 Query 39944 AATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAA 40003 | |||||||| |||| | || | | ||| || ||| || ||| | |||| ||| | Sbjct 1234 ATGCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGA 1293 Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 ||||| ||| ||||||||||| || || || || || | || | ||||||| | Sbjct 1294 TTTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGT 1353 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 || | || | | | || ||| | || ||||| || | ||| || |||||| Sbjct 1354 CGCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCA 1413 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 ||| ||| || || || | ||||||||||| | | ||| ||||| ||||||| ||| Sbjct 1414 ACTGACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATT 1473 Query 40184 GGAAAAATAACAAA 40197 || || || ||||| Sbjct 1474 GGCAATATCACAAA 1487 >seq110960 Length=1818 Score = 215 bits (238), Expect = 7e-51 Identities = 600/917 (65%), Gaps = 55/917 (6%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 |||||||||||| ||||| || ||||| || || || |||||||| || | || ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATT--ATAtttttttttAAATCCTAATTCTGAA 39442 ||||| |||||||| ||||| ||||| | || || | ||| || | || | Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAA--CCAAGCTCGTAC 1119 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | ||| | ||| ||||||||||| | ||| |||||| ||||| ||||| || || Sbjct 1118 AGCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATC 1059 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 ||||| || |||| ||||| | | || | ||||| || || | ||||| | | | Sbjct 1058 AGTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAAT 999 Query 39563 ATCGATGTTAC---TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG 39619 || | || | ||| ||| || | || | |||||| |||| | ||| Sbjct 998 ATAGCATAAACACGTTCCTTATC---GGGCTTTTTCACGATATGTTTGAACAGAAGGCAA 942 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || ||||| || ||||| || || | |||||| | ||| || || || | || Sbjct 941 GCAAAGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCT 882 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||| || |||||||| || ||||||||||| | |||||| || |||||||||| Sbjct 881 GGCATCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACT 822 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTC----TCCGT--AACTTGTATCATTATGT 39793 ||||| | ||| ||||| || ||| | ||| ||| | |||||||| | Sbjct 821 CCTTCGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGTTGACTTTGTATCACCA--- 765 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAA--------------GGCATT- 39838 ||||| | | ||||| | || || || | ||||||| |||||| Sbjct 764 ATCCAGTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTCGTGATGGCATTA 705 Query 39839 --------GTTTCTA--------TAGCATTAAAGAGATAATGTTTTTCATCACT--ATCT 39880 | |||| ||| ||||| | | || ||||| |||| |||| Sbjct 704 AACAAGAAATCTCTAAGAAAACTTAGATTTAAAAATA-CATACTTTTC--CACTGGATCT 648 Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 | ||| ||||| || | |||| |||||| || ||||| || ||||| || |||||| Sbjct 647 CGGATATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATC 588 Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 || | |||||||| |||| | || | | ||| || ||| || ||| | |||| || Sbjct 587 TGCATGCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACC 528 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAA 40060 | |||||| ||| ||||||||||| || || || || || | || | |||||| Sbjct 527 AGATTTTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAA 468 Query 40061 TATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 40120 | | || | || | | | || ||| | || ||||| || | ||| || ||| Sbjct 467 TGTCGCTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCT 408 Query 40121 TCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGT 40180 ||| ||| ||| || || || | ||||||||||| | | ||| ||||| ||||||| Sbjct 407 TCAACTGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGG 348 Query 40181 ATTGGAAAAATAACAAA 40197 ||||| || || || || Sbjct 347 ATTGGCAATATCACGAA 331 >seq93010 Length=2134 Score = 203 bits (224), Expect = 4e-47 Identities = 458/685 (67%), Gaps = 4/685 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||| ||| ||||| | |||| | ||||||||||| | ||| ||| | | Sbjct 824 TCAAATTGATCACCCCACAAATCAGAAAGGCCAGGACATTCGTGCGGATCCATAAGACTC 765 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | ||| | ||| ||| || |||||| |||||||| |||||||| || ||| Sbjct 764 CAGTCGCCATTAGCCTCAACACGGCGCATAAACAGATCGGGGATCCAAAGGGCATAAAAA 705 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 ||||| || | | | ||||| || || || || | || | || | | Sbjct 704 AGATCCCTAGCACGAACCTCTTCTGCACCAGTGTTCTTGCGTAATTCTACGAAGGAGAGA 645 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 || || | ||||||||| || ||||| || || | | | || || | | || || ||| Sbjct 644 ATGTCCGTATGCCATGGCTCGAGATAGATGGCAAAGGCACCAGGCCTCCTGTTACCACCC 585 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||| | ||| | ||||| || ||| | || | | ||| || | || ||||| || Sbjct 584 TGATCGACGTAGCGAGCAGTATTGTTAAAAACACGTAACATTGGCACAAGTCCATTGGAG 525 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 | |||||| || |||| |||||| | || | |||| || | || | || ||| Sbjct 524 TAACCATTCGTACCAGCAATATAGGTACCAGTGCCGCGTATGCAATGAACATTTACACCA 465 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || ||||||| || || ||||| | | ||| ||||| || ||||| Sbjct 464 ATACCCCCAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCCCTCA 405 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 ||||| ||||| |||| | | |||||||||||| ||||| || | | || || Sbjct 404 ATGCTGTCATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGTACCA 345 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 | |||||| | || || || |||||||| ||||| || || | || ||||| ||| Sbjct 344 GAATTAAAGAGAGTGGGGGAAGCGTGAGTAAACCACTTCAAGGACATCAAGTTGTAGGTT 285 Query 70057 TCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||| ||| ||||| || || | ||||| || || | ||| | ||||| |||||| Sbjct 284 TCACAGACTGCCTCTATGTCATCAAAG-TGAATACCAATTGAGACTCTCATCAGCATATG 226 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 |||||| ||||| |||||||| ||||| | || ||||| | |||| || || Sbjct 225 CTGAGGACGTTCATGAACTTTATTATCGATTTTAAGAAGATATGAGTGCTCCAATGTCTT 166 Query 70176 AAACCCAAAATAGTTGTA--TGAAA 70198 ||| ||||| || ||||| ||||| Sbjct 165 AAAGCCAAAGTAATTGTAGTTGAAA 141 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 ||| | || || |||||||||||||| | ||||| | | | | ||| || || | Sbjct 1790 GGACTGACAATCTGAAATTCCCCAGAGAGGACTCTTCTTGAAAAGACATTGCTTGTCAAG 1731 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| ||||| | ||||| || ||||| || ||||||||||||||||||||||| Sbjct 1730 GGTTCAGTGGATTCGGTGTTTCCTAGTATTTGTGCCGTTGATGCAGTTGGCATAGGTGCT 1671 Query 68827 ACCAATAAACTATTTCTAAGACCATG 68852 | | |||||||| | ||||| || Sbjct 1670 ATTAGCAAACTATTGCGCAGACCTTG 1645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684192092868720