Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 105 6e-18
seq32333 105 6e-18
seq270304 102 7e-17
seq110960 84.2 2e-11
seq75644 84.2 2e-11
>seq171037
Length=1136
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTC 27097
|||| || || ||||| ||||| |||||||| || ||| | |||| || ||||||
Sbjct 997 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT-GTCTTC 939
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
|| ||||| ||||| |||| | || || || || || || | || ||||||||
Sbjct 938 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 879
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||| || ||| | | |||| || ||||| | | ||| ||||| | ||| || | ||
Sbjct 878 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 819
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||||||||||||| ||||| || |||||
Sbjct 818 GCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| ||||||||||| || | | | | | |||||||| ||||| ||
Sbjct 757 GTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCA 698
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| |||| || | |||||||| || || | ||| || || || ||||| ||
Sbjct 697 GCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTT 638
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | |||| ||||| | | ||| ||||| ||||| || | || || ||||| |||
Sbjct 637 ACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTT 578
Query 27231 TTCACAAAGATTTGCAT 27247
|| ||||| ||||||||
Sbjct 577 TTGACAAATATTTGCAT 561
>seq32333
Length=4216
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTC 27097
|||| || || ||||| ||||| |||||||| || ||| | |||| || ||||||
Sbjct 3779 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT-GTCTTC 3837
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
|| ||||| ||||| |||| | || || || || || || | || ||||||||
Sbjct 3838 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 3897
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||| || ||| | | |||| || ||||| | | ||| ||||| | ||| || | ||
Sbjct 3898 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 3957
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||||||||||||| ||||| || |||||
Sbjct 3958 GCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| ||||||||||| || | | | | | |||||||| ||||| ||
Sbjct 4019 GTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCA 4078
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| |||| || | |||||||| || || | ||| || || || ||||| ||
Sbjct 4079 GCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTT 4138
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | |||| ||||| | | ||| ||||| ||||| || | || || ||||| |||
Sbjct 4139 ACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTT 4198
Query 27231 TTCACAAAGATTTGCAT 27247
|| ||||| ||||||||
Sbjct 4199 TTGACAAATATTTGCAT 4215
>seq270304
Length=645
Score = 102 bits (112), Expect = 7e-17
Identities = 166/238 (70%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 27013 AATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072
|||||| ||| || || | || | || | ||| | ||||| || ||||| ||||| |
Sbjct 71 AATTAT-GCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTAT 129
Query 27073 AGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGAT 27132
|||| | | || | ||||| ||||| || || ||| |||| || | || ||||
Sbjct 130 AGTCAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGAT 189
Query 27133 CCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGG 27192
| | || | ||| || ||||| ||||| |||| |||| ||||| | ||| |
Sbjct 190 CTGAGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCG 249
Query 27193 CTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250
|||||||||||| ||||||| ||| || || | ||||| ||||| |||||||| ||
Sbjct 250 GTTCAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCATCGC 307
>seq110960
Length=1818
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 108577 CCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTT 108636
|||||||||||||| || || || || ||||| ||||| || ||||| | || | |
Sbjct 923 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 864
Query 108637 TTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGA 108685
|||| ||||||| | |||||||||||||||||| || | ||| ||||
Sbjct 863 TTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTCGA 815
>seq75644
Length=2520
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 108577 CCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTT 108636
|||||||||||||| || || || || ||||| ||||| || ||||| | || | |
Sbjct 896 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 955
Query 108637 TTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGA 108685
|||| ||||||| | |||||||||||||||||| || | ||| ||||
Sbjct 956 TTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTCGA 1004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423295810194576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |