Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq171037 105 6e-18 seq32333 105 6e-18 seq270304 102 7e-17 seq110960 84.2 2e-11 seq75644 84.2 2e-11 >seq171037 Length=1136 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTC 27097 |||| || || ||||| ||||| |||||||| || ||| | |||| || |||||| Sbjct 997 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT-GTCTTC 939 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| ||||| |||| | || || || || || || | || |||||||| Sbjct 938 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 879 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || ||| | | |||| || ||||| | | ||| ||||| | ||| || | || Sbjct 878 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 819 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||| ||||| || ||||| Sbjct 818 GCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||||||||| || | | | | | |||||||| ||||| || Sbjct 757 GTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCA 698 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | |||||||| || || | ||| || || || ||||| || Sbjct 697 GCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTT 638 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | |||| ||||| | | ||| ||||| ||||| || | || || ||||| ||| Sbjct 637 ACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTT 578 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 577 TTGACAAATATTTGCAT 561 >seq32333 Length=4216 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTC 27097 |||| || || ||||| ||||| |||||||| || ||| | |||| || |||||| Sbjct 3779 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGACT-GTCTTC 3837 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| ||||| |||| | || || || || || || | || |||||||| Sbjct 3838 TAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTG 3897 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || ||| | | |||| || ||||| | | ||| ||||| | ||| || | || Sbjct 3898 GATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGTAATTGTCTT 3957 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||| ||||| || ||||| Sbjct 3958 GCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||||||||| || | | | | | |||||||| ||||| || Sbjct 4019 GTTGACTCTTTCTGAATATTGTAATCTGATAGGGTCCTGCCATCTTCGAGTTGTTTTCCA 4078 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | |||||||| || || | ||| || || || ||||| || Sbjct 4079 GCAAAAATAAGCCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTCGACTTT 4138 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | |||| ||||| | | ||| ||||| ||||| || | || || ||||| ||| Sbjct 4139 ACGTTCTCTATTGTGTCACTTGATTCCACTTCAAGAGTAATTGTCTTTCCAGTCAGTGTT 4198 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 4199 TTGACAAATATTTGCAT 4215 >seq270304 Length=645 Score = 102 bits (112), Expect = 7e-17 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27013 AATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072 |||||| ||| || || | || | || | ||| | ||||| || ||||| ||||| | Sbjct 71 AATTAT-GCCCCCACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTAT 129 Query 27073 AGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGAT 27132 |||| | | || | ||||| ||||| || || ||| |||| || | || |||| Sbjct 130 AGTCAGAAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGAT 189 Query 27133 CCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGG 27192 | | || | ||| || ||||| ||||| |||| |||| ||||| | ||| | Sbjct 190 CTGAGGGAATACCTTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCG 249 Query 27193 CTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 |||||||||||| ||||||| ||| || || | ||||| ||||| |||||||| || Sbjct 250 GTTCAACTTCTAGGGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCATCGC 307 >seq110960 Length=1818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 108577 CCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTT 108636 |||||||||||||| || || || || ||||| ||||| || ||||| | || | | Sbjct 923 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 864 Query 108637 TTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGA 108685 |||| ||||||| | |||||||||||||||||| || | ||| |||| Sbjct 863 TTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTCGA 815 >seq75644 Length=2520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 108577 CCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTT 108636 |||||||||||||| || || || || ||||| ||||| || ||||| | || | | Sbjct 896 CCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGCCACGCTTC 955 Query 108637 TTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGA 108685 |||| ||||||| | |||||||||||||||||| || | ||| |||| Sbjct 956 TTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTCGA 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423295810194576