Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq75644 93.3 5e-14 seq93010 89.7 6e-13 >seq75644 Length=2520 Score = 93.3 bits (102), Expect = 5e-14 Identities = 326/500 (65%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||| |||||||| ||||||||||| || || || | ||||||||||||| Sbjct 590 TATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATTCTCCATA 649 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 |||||||| || |||| | |||||||| | || | | |||| || | || | || Sbjct 650 AAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTA-ACCAAGCTCGTATAGCAAGCG 708 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || | || | ||| ||||| | || ||||||| || || || || Sbjct 709 ATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAGTTTTAC 768 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || | || || | ||| |||| || || |||| || ||| | || || | Sbjct 769 GGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATATAGCATA 828 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGC-AAAGTCTTGAAGAGTTCCACGGCAAACTCCT 130025 || ||| | | || || || | | | | ||||| || ||||| || Sbjct 829 AACACGTTCCTTATC-GGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAAAGTCGG 887 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||| || || ||||| || || |||||||| |||| || |||||||| || | Sbjct 888 TGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCATCAGGC 947 Query 130086 CCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 | |||||||| | ||| || || | | ||||| ||| || ||||||| || || | Sbjct 948 CACGCTTCTTAAGCCAAAATATAGACGCAAAA-CTGCCGGAAAAGAAGACTCCTTCGATT 1006 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTAT---CAAACCACTTC 130201 || || || | |||||| ||||| | |||||||||| ||| ||| | Sbjct 1007 GCAGCAAAGGCTGCAATACGCTCGGCAAACG---TTGACTTTGTATCACCAATCCAGTCA 1063 Query 130202 ATCGCCCACTGCGCCTTTTT 130221 | ||||||||||||||||| Sbjct 1064 AGGGCCCACTGCGCCTTTTT 1083 >seq93010 Length=2134 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 |||||||||||| || | || || || | || || | | ||| | | || || || Sbjct 468 ACCAATACCCCCAGCACTTTTAGAAATAAGGGCACATTGCCGGAGTGTATCATAAATGCC 409 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 || || |||| |||| ||| || || || ||||| ||||| || ||||| ||||| Sbjct 408 CTCAATGCTGTCATCCTTCATTGTGACAAGAAAACAGCTGGACATCTGGGGCCTTGGTGT 349 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487 ||||| || |||||||| || | ||||| | ||| || | ||||||| || || Sbjct 348 ACCAGAATTAAAGAGAGTGGGGGAAGCGTGAGTAAAC-CACTTCAAGGACATCAAGTTGT 290 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 |||| || |||| || ||||| || ||||||||| || ||||| | ||| | || Sbjct 289 AGGTTTCACAGACTGCCTCTATGTCATCAAAGTGAATACCAATTGAGACTCTCATCAGCA 230 Query 119548 T 119548 | Sbjct 229 T 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615989304244880