Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq93010 98.7 1e-15 >seq93010 Length=2134 Score = 98.7 bits (108), Expect = 1e-15 Identities = 354/548 (65%), Gaps = 7/548 (1%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||| | || | || |||||||| || ||||| || | ||| Sbjct 220 CCTCAGCATATGCTGATGAGAGTCTCAATTGGTATTCACTTTGATGACATAGAGGCAGTC 279 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || || ||| || ||||||| | || ||| | |||||| | || || ||||| Sbjct 280 TGTGAAACCTACAACTTGATGTCCTTGAAGTG-GTTTACTCACGCTTCCCCCACTCTCTT 338 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| ||||||||||||| ||||| |||||||| || || ||| || | | ||||| || Sbjct 339 TAATTCTGGTACACCAAGGCCCCAGATGTCCAGCTGTTTTCTTGTCACAATGAAGGATGA 398 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || || |||| || || | | ||||| | || || || | ||||| Sbjct 399 CAGCATTGAGGGCATTTATGATACACTCCGGCAATGTGCCCTTATTTCTAAAAGTGCTGG 458 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||||||| | | | ||| | | | || | | |||| || || || Sbjct 459 GGGTATTGGTGTAAATGTTCATTGCATACGCGGCACTGGTACCTATATTGCTGGTACGAA 518 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 |||| | || |||| || | |||||| | || || |||||| || || ||||| || Sbjct 519 TGGTTACTCCAATGGACTTGTGCCAATGTTACGTGTTTTTAACAATACTGCTCGCTACGT 578 Query 104581 AAATCAAGCTGGGCGTCGAAAG---GGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||| | ||| | | | || | | || ||||||| ||||||||||| | Sbjct 579 CGATCAGGGTGGTAACAGGAGGCCTGGTGCCTTTGCCATCTATCTCGAGCCATGGCATAC 638 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-C 104696 ||| || | ||| | || || || ||| |||| || |||| | |||| Sbjct 639 GGACATTCTCTCCTTCGTAGAATTACGCAAGAACACTGGTGCAGAAGAGGTTC-GTGCTA 697 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | ||||| || | || || ||||| || ||||| || ||| | ||||||| | || Sbjct 698 GGGATCTTTTTTATGCCCTTTGGATCCCCGATCTGTTTATGCGCCGTGTTGAGGCTAATG 757 Query 104757 GCAATTGG 104764 || | ||| Sbjct 758 GCGACTGG 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580954018117520