Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq93010 114 1e-20
>seq93010
Length=2134
Score = 114 bits (126), Expect = 1e-20
Identities = 347/530 (65%), Gaps = 16/530 (3%)
Strand=Plus/Plus
Query 19159 AGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218
|||| | || || ||| || ||||| | ||||| || || ||||| | || || ||
Sbjct 276 AGTCTGTGAAACCTACAACTTGATGTCCTTGAAGTGGTTTACTCACGCTTCCCCCACTCT 335
Query 19219 TTTCAACGCCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGG 19277
|| || | ||||| | ||| || |||||||| |||||||| || || | |||||||
Sbjct 336 CTTTAATTCTGGTAC-ACCAAGGCCCCAGATGTCCAGCTGTTTTCTTGTCACAATGAAGG 394
Query 19278 ATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGT 19337
||||||||||||||||||| || || || ||| | | || || | || || || |
Sbjct 395 ATGACAGCATTGAGGGCATTTATGATACACTCCGGCAATGTGCCCTTATTTCTAAAAGTG 454
Query 19338 CCGGGGGTATCGGGATCCACTGCTC---GAATATCCGGTCGAGTGGTACACGAATCAATG 19394
| |||||||| || | | || || | ||| ||| | |||||| || ||
Sbjct 455 CTGGGGGTATTGGTGT-AAATGTTCATTGCATACGCGG--CACTGGTACCTATATTGCTG 511
Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454
| ||||| || || | || | || |||||| | || || || ||||| || ||
Sbjct 512 GTACGAATGGTTACTCCAATGGACTTGTGCCAATGTTACGTGTTTTTAACAATACTGCTC 571
Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCT----CGTTCGCCATCTACCTCGAG 19510
| |||||| | ||||| || ||| ||| || | || |||||||| ||||||
Sbjct 572 GCTACGTCGATCAGGGTGG----TAACAGGAGGCCTGGTGCCTTTGCCATCTATCTCGAG 627
Query 19511 CCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAG 19570
|||||||| ||||| | | ||| | ||| | ||| |||| |||| || |||
Sbjct 628 CCATGGCATACGGACATTCTCTCCTTCGTAGAATTACGCAAGAACACTGGTGCAGAAGAG 687
Query 19571 ATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTT 19630
| || | | || || || ||| | ||||| || || || || ||| |||
Sbjct 688 GTTCGTGCTAGGGATCTTTTTTATGCCCTTTGGATCCCCGATCTGTTTATGCGCCGTGTT 747
Query 19631 GAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680
||| | | || ||| || ||| ||||||||||| ||||||||
Sbjct 748 GAGGCTAATGGCGACTGGAGTCTTATGGATCCGCACGAATGTCCTGGCCT 797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546355398129120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |