Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq93010 114 1e-20 >seq93010 Length=2134 Score = 114 bits (126), Expect = 1e-20 Identities = 347/530 (65%), Gaps = 16/530 (3%) Strand=Plus/Plus Query 19159 AGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218 |||| | || || ||| || ||||| | ||||| || || ||||| | || || || Sbjct 276 AGTCTGTGAAACCTACAACTTGATGTCCTTGAAGTGGTTTACTCACGCTTCCCCCACTCT 335 Query 19219 TTTCAACGCCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGG 19277 || || | ||||| | ||| || |||||||| |||||||| || || | ||||||| Sbjct 336 CTTTAATTCTGGTAC-ACCAAGGCCCCAGATGTCCAGCTGTTTTCTTGTCACAATGAAGG 394 Query 19278 ATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGT 19337 ||||||||||||||||||| || || || ||| | | || || | || || || | Sbjct 395 ATGACAGCATTGAGGGCATTTATGATACACTCCGGCAATGTGCCCTTATTTCTAAAAGTG 454 Query 19338 CCGGGGGTATCGGGATCCACTGCTC---GAATATCCGGTCGAGTGGTACACGAATCAATG 19394 | |||||||| || | | || || | ||| ||| | |||||| || || Sbjct 455 CTGGGGGTATTGGTGT-AAATGTTCATTGCATACGCGG--CACTGGTACCTATATTGCTG 511 Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454 | ||||| || || | || | || |||||| | || || || ||||| || || Sbjct 512 GTACGAATGGTTACTCCAATGGACTTGTGCCAATGTTACGTGTTTTTAACAATACTGCTC 571 Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCT----CGTTCGCCATCTACCTCGAG 19510 | |||||| | ||||| || ||| ||| || | || |||||||| |||||| Sbjct 572 GCTACGTCGATCAGGGTGG----TAACAGGAGGCCTGGTGCCTTTGCCATCTATCTCGAG 627 Query 19511 CCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAG 19570 |||||||| ||||| | | ||| | ||| | ||| |||| |||| || ||| Sbjct 628 CCATGGCATACGGACATTCTCTCCTTCGTAGAATTACGCAAGAACACTGGTGCAGAAGAG 687 Query 19571 ATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTT 19630 | || | | || || || ||| | ||||| || || || || ||| ||| Sbjct 688 GTTCGTGCTAGGGATCTTTTTTATGCCCTTTGGATCCCCGATCTGTTTATGCGCCGTGTT 747 Query 19631 GAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 ||| | | || ||| || ||| ||||||||||| |||||||| Sbjct 748 GAGGCTAATGGCGACTGGAGTCTTATGGATCCGCACGAATGTCCTGGCCT 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546355398129120