Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq157544 196 5e-45 seq171037 167 3e-36 seq32333 163 3e-35 seq270304 152 6e-32 seq256849 136 4e-27 seq110960 93.3 5e-14 >seq157544 Length=1252 Score = 196 bits (216), Expect = 5e-45 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| ||||| || |||||||| || || ||||||||||| | Sbjct 1033 ATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCGAGC 1092 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| |||||||||||||| |||||||| || || || || ||| Sbjct 1093 GATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGATCAG 1152 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||||||||||||||| || || || || ||||||| ||| || || ||||||| || Sbjct 1153 CAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTACAAC 1212 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||||||||| ||||| ||||| ||| | ||||| Sbjct 1213 ATTCAAAAGGAATCAACTCTACATCTTGTCCTCCGTCT 1250 >seq171037 Length=1136 Score = 167 bits (184), Expect = 3e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 ||| ||||||||| |||||||| || || || || ||||| ||||||||||| || || | Sbjct 556 CTAAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAAT 615 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || |||| | || | || | ||| | || ||||| |||||||| || ||||| || | Sbjct 616 CAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTG 675 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 | || || | || ||||||||||| || |||||||| |||| | |||||| |||| | Sbjct 676 ATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATT 735 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | || || || || ||||||||||| || | |||||||| ||||| Sbjct 736 ACAATATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGG 787 >seq32333 Length=4216 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || || || || ||||| ||||||||||| || || ||| | Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || | ||| | || ||||| |||||||| || ||||| || || || Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || ||||||||||| || |||||||| |||| | |||||| |||| || || Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || ||||||||||| || | |||||||| ||||| Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGG 3989 >seq270304 Length=645 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | ||||| || ||||| || || || ||||| | Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| | | |||| ||||||| || || || || ||||| || ||||| |||| ||| Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| ||||| ||||| || || |||| |||||| || | ||||||||| Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| |||||||||||||| | |||||||| || || Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGTTCTTCGTCTTCGTGGGGG 78 >seq256849 Length=689 Score = 136 bits (150), Expect = 4e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||| |||||||| || || |||||||||||||||||||||||||| || ||||| Sbjct 503 ATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAGCGTCTAATTTTTGCAGGCAAGCAG 562 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| ||| || | ||||||| || | ||||||||||| ||||| || || Sbjct 563 CTAGAGGATGGTCGCACTTTGTCAGACTACAACATTCAAAAGGAATCAACTCTACACCTT 622 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 ||| | ||||| || ||||| Sbjct 623 GTCCTCCGTCTCCGAGGTGG 642 >seq110960 Length=1818 Score = 93.3 bits (102), Expect = 5e-14 Identities = 306/461 (66%), Gaps = 15/461 (3%) Strand=Plus/Plus Query 64706 CGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA- 64764 |||||| ||||| | ||||| ||||| | |||||| | |||||||| || || Sbjct 782 CGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGG--CAG 839 Query 64765 TTCTGT-TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAA 64823 || || ||||| || ||||| || ||||| |||||||||||||| || | || || Sbjct 840 TTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAA 899 Query 64824 CGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGC 64881 || || || ||| ||||| || || ||| || ||||| || || ||||||| Sbjct 900 TGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGC--TTGCCTTCTGTTCAAA 957 Query 64882 CACCTCAAGGACAAACCATCACATGGGAC-TATAATTGATATAGTAAAATCGGCTGTAGA 64940 || || || ||| | | | || || | | || |||| | || ||| | || Sbjct 958 CATATC-GTGAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGA 1016 Query 64941 AATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTGTC-GTCTCATCGGCATGGATGCCG 64999 || ||||||| ||| ||| || || ||| | ||| || || |||||| | | Sbjct 1017 GATAGAAAAGGCTTTCTTTAATGAGGC-CTTACCCGTCAAACTGATTGGCATGAACTGTG 1075 Query 65000 ATAAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCT-TACTCAGTTTGGTATT 65058 ||| |||| | || |||||||||| || |||||| |||| ||| || ||||| Sbjct 1076 ATATGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTAC-GAGCTTGGTTAC 1134 Query 65059 AAGCCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGG 65118 || |||||| || ||||| ||||| | ||||||| ||| | ||||| Sbjct 1135 GAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGC 1194 Query 65119 AAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 || || ||||| ||||| ||| | || || || ||| |||| Sbjct 1195 AAAACGAACTTCTTTGAGAAGCGTGTTGGGGAATAC-CAAA 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568054836625760