Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 196 5e-45
seq171037 167 3e-36
seq32333 163 3e-35
seq270304 152 6e-32
seq256849 136 4e-27
seq110960 93.3 5e-14
>seq157544
Length=1252
Score = 196 bits (216), Expect = 5e-45
Identities = 174/218 (80%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| ||||| || |||||||| || || ||||||||||| |
Sbjct 1033 ATGCAAATATTCGTAAAGACCCTTACTGGAAAGACTATCACACTCGAGGTTGAGTCGAGC 1092
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| |||| |||||||||||||| |||||||| || || || || |||
Sbjct 1093 GATACGATAGAGAATGTGAAAGCTAAAATTCAGGATAAGGAGGGCATCCCACCGGATCAG 1152
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||||||||||||||| || || || || ||||||| ||| || || ||||||| ||
Sbjct 1153 CAGCGTCTAATTTTTGCAGGCAAACAGCTAGAGGATGGTCGCACTCTGTCAGACTACAAC 1212
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
| ||||||||||| ||||| ||||| ||| | |||||
Sbjct 1213 ATTCAAAAGGAATCAACTCTACATCTTGTCCTCCGTCT 1250
>seq171037
Length=1136
Score = 167 bits (184), Expect = 3e-36
Identities = 176/232 (76%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
||| ||||||||| |||||||| || || || || ||||| ||||||||||| || || |
Sbjct 556 CTAAAATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAAT 615
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
|| |||| | || | || | ||| | || ||||| |||||||| || ||||| || |
Sbjct 616 CAAGTGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTG 675
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
| || || | || ||||||||||| || |||||||| |||| | |||||| |||| |
Sbjct 676 ATCAACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATT 735
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| | || || || || ||||||||||| || | |||||||| |||||
Sbjct 736 ACAATATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGG 787
>seq32333
Length=4216
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| |||||||| || || || || ||||| ||||||||||| || || ||| |
Sbjct 4216 AATGCAAATATTTGTCAAAACACTGACTGGAAAGACAATTACTCTTGAAGTGGAATCAAG 4157
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | || | || | ||| | || ||||| |||||||| || ||||| || || ||
Sbjct 4156 TGACACAATAGAGAACGTAAAGTCGAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 4097
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| | || ||||||||||| || |||||||| |||| | |||||| |||| || ||
Sbjct 4096 ACAAAGGCTTATTTTTGCTGGAAAACAACTCGAAGATGGCAGGACCCTATCAGATTACAA 4037
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | || || || || ||||||||||| || | |||||||| |||||
Sbjct 4036 TATTCAGAAAGAGTCAACTCTTCATCTTGTGCTTCGTCTTCGTGGTGG 3989
>seq270304
Length=645
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| || || | ||||| || ||||| || || || ||||| |
Sbjct 304 ATGCAAATTTTTGTTAAAACATTAACCGGAAAAACTATAACCCTAGAAGTTGAACCGACA 245
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| | | |||| ||||||| || || || || ||||| || ||||| |||| |||
Sbjct 244 AATACTGTCGAAAATGTGAAGGCAAAGATACAAGATAAGGAAGGTATTCCCTCAGATCAG 185
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || ||||| ||||| ||||| || || |||| |||||| || | |||||||||
Sbjct 184 CAAAGGCTTATTTTCGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTTCTGACTATAAT 125
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| |||||||||||||| | |||||||| || ||
Sbjct 124 ATACAAAAGGAATCTACTCTTCATCTAGTTCTTCGTCTTCGTGGGGG 78
>seq256849
Length=689
Score = 136 bits (150), Expect = 4e-27
Identities = 114/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|||||||| |||||||| || || |||||||||||||||||||||||||| || |||||
Sbjct 503 ATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAGCGTCTAATTTTTGCAGGCAAGCAG 562
Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612
|| ||||||| ||| || | ||||||| || | ||||||||||| ||||| || ||
Sbjct 563 CTAGAGGATGGTCGCACTTTGTCAGACTACAACATTCAAAAGGAATCAACTCTACACCTT 622
Query 27613 GTCTTGCGTCTTCGCGGTGG 27632
||| | ||||| || |||||
Sbjct 623 GTCCTCCGTCTCCGAGGTGG 642
>seq110960
Length=1818
Score = 93.3 bits (102), Expect = 5e-14
Identities = 306/461 (66%), Gaps = 15/461 (3%)
Strand=Plus/Plus
Query 64706 CGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA- 64764
|||||| ||||| | ||||| ||||| | |||||| | |||||||| || ||
Sbjct 782 CGTTTGCCGAGCGTATTGCAGCCTTTGCTGCAATCGAAGGAGTCTTCTTTTCCGG--CAG 839
Query 64765 TTCTGT-TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAA 64823
|| || ||||| || ||||| || ||||| |||||||||||||| || | || ||
Sbjct 840 TTTTGCGTCTATATTTTGGCTTAAGAAGCGTGGCCTGATGCCAGGCTTGACCTTCAGCAA 899
Query 64824 CGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGC 64881
|| || || ||| ||||| || || ||| || ||||| || || |||||||
Sbjct 900 TGAACTTATTAGTCGCGACGAAGGCCTTCACACCGACTTTGC--TTGCCTTCTGTTCAAA 957
Query 64882 CACCTCAAGGACAAACCATCACATGGGAC-TATAATTGATATAGTAAAATCGGCTGTAGA 64940
|| || || ||| | | | || || | | || |||| | || ||| | ||
Sbjct 958 CATATC-GTGAAAAAGCCCGATAAGGAACGTGTTTATGCTATATTCAAGGAGGCATTGGA 1016
Query 64941 AATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTGTC-GTCTCATCGGCATGGATGCCG 64999
|| ||||||| ||| ||| || || ||| | ||| || || |||||| | |
Sbjct 1017 GATAGAAAAGGCTTTCTTTAATGAGGC-CTTACCCGTCAAACTGATTGGCATGAACTGTG 1075
Query 65000 ATAAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCT-TACTCAGTTTGGTATT 65058
||| |||| | || |||||||||| || |||||| |||| ||| || |||||
Sbjct 1076 ATATGATGTGCCGCTACCTCGAATTTGTTGCCGATCGCTTGCTGTAC-GAGCTTGGTTAC 1134
Query 65059 AAGCCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGG 65118
|| |||||| || ||||| ||||| | ||||||| ||| | |||||
Sbjct 1135 GAGAAGATTTGGAATGCTGAGAATCCCTTTGATTTTATGGAGAATATCTCGATCGAGGGC 1194
Query 65119 AAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159
|| || ||||| ||||| ||| | || || || ||| ||||
Sbjct 1195 AAAACGAACTTCTTTGAGAAGCGTGTTGGGGAATAC-CAAA 1234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568054836625760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |