Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq171037 96.9 2e-15 seq32333 96.9 2e-15 seq157544 82.4 5e-11 >seq171037 Length=1136 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| || | ||| || |||||| |||||||| |||||||| Sbjct 979 TCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAA 920 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| || || ||||| || || | ||| || || ||| ||| ||| | ||| | | | Sbjct 919 ATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGAT-TTTAGCTTTGATGTT 861 Query 34636 AAA-ATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | |||||| | | | || ||||||| || || || || || || | ||||| | Sbjct 860 TTCCACTGTGTCACTTGAT-TCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAA 802 Query 34694 CAAAAATCTGCATG 34707 |||||||||||||| Sbjct 801 CAAAAATCTGCATG 788 >seq32333 Length=4216 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| || | ||| || |||||| |||||||| |||||||| Sbjct 3797 TCTTTCTGAATATTATAATCGGATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAA 3856 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| || || ||||| || || | ||| || || ||| ||| ||| | ||| | | | Sbjct 3857 ATTAATCGTTGCTGGTCAGGGGGAATTCCTTCTTTATCTTGGAT-TTTAGCTTTGATGTT 3915 Query 34636 AAA-ATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | |||||| | | | || ||||||| || || || || || || | ||||| | Sbjct 3916 TTCCACTGTGTCACTTGAT-TCGACTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAA 3974 Query 34694 CAAAAATCTGCATG 34707 |||||||||||||| Sbjct 3975 CAAAAATCTGCATG 3988 >seq157544 Length=1252 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| ||||| |||||||||||||| || ||||| || || || Sbjct 1250 AGACGGAGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGA 1191 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| || ||||| |||| |||||| || ||||| || | |||||| Sbjct 1190 CCATCCTCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCC 1131 Query 34609 TTGTC 34613 || || Sbjct 1130 TTATC 1126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313515970992734