Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq171037 159 8e-34 seq32333 154 3e-32 seq157544 123 6e-23 seq256849 87.8 4e-12 >seq171037 Length=1136 Score = 159 bits (176), Expect = 8e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| |||||||| |||||||| || || || ||||| | ||||| Sbjct 782 ACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGT 723 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| |||||||| || || || || || || ||||| | |||||| ||||| |||| || Sbjct 722 CCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACC 663 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || ||||| || || |||||| ||| || || || Sbjct 662 TTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAG 603 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||| || |||||||| || || || || ||||| | ||||||||| Sbjct 602 AGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 >seq32333 Length=4216 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| |||||||| |||||||| || || || ||||| | ||||| Sbjct 3994 ACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGT 4053 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| |||||||| || || || || || || ||||| | |||||| ||||| |||| || Sbjct 4054 CCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACC 4113 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || ||||| || || |||||| ||| || || || Sbjct 4114 TTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAG 4173 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || |||||||| || || || || ||||| | |||||| Sbjct 4174 AGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 >seq157544 Length=1252 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| || || ||||| ||||| || || | || || | ||||| Sbjct 1244 AGGACAAGATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCC 1185 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| |||||||| || || || || || || || || || | || ||||| ||| Sbjct 1184 TCTAGCTGTTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 1125 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 || || || |||||| || || || || || ||| ||||||||||| ||||| Sbjct 1124 TGAATTTTAGCTTTCACATTCTCTATCGTATC---GCTCGACTCAACCTCGAGTGTGATA 1068 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || |||||||| || | ||||| Sbjct 1067 GTCTTTCCAGTAAGGGTCTTTACGAATATTTGCAT 1033 >seq256849 Length=689 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| || || ||||| ||||| || || | | || | ||||| Sbjct 627 AGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGACCATCC 568 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||||||| || || || || || ||||| || || | || ||||| ||| Sbjct 567 TCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC 508 Query 211023 TGGATC 211028 || ||| Sbjct 507 TGAATC 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154452972389270