Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq157544 109 5e-19 seq171037 98.7 8e-16 seq32333 98.7 8e-16 >seq157544 Length=1252 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 |||||| || || ||||| || || || || | || || || | || || ||||| Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199 |||||| ||||| || ||||||||||| || |||||| | || ||| || ||| |||| Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGG-ATGCCCTCCTTATCCTGAATTT 1118 Query 39200 TCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | ||| | || | | ||||||||||||||| || || | |||||| | ||||| | Sbjct 1117 TAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAG 1058 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || || || || || ||||||||| || Sbjct 1057 TAAGGGTCTTTACGAATATTTGCATCGTT 1029 >seq171037 Length=1136 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 ||||||| || | | || ||||| || | || ||||| || ||||||||||||| Sbjct 1017 AGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGG 958 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 | ||| || ||| || || ||||| || ||||| || | || |||||||| | || Sbjct 957 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 898 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||||| || |||||| ||||| | |||| || || || || || | Sbjct 897 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGA 838 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || || | || |||||||| ||||||||||| || ||||| Sbjct 837 CTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789 >seq32333 Length=4216 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 ||||||| || | | || ||||| || | || ||||| || ||||||||||||| Sbjct 3759 AGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGG 3818 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 | ||| || ||| || || ||||| || ||||| || | || |||||||| | || Sbjct 3819 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 3878 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||||| || |||||| ||||| | |||| || || || || || | Sbjct 3879 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGA 3938 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || || | || |||||||| ||||||||||| || ||||| Sbjct 3939 CTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427889228943374