Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq157544 109 5e-19
seq171037 98.7 8e-16
seq32333 98.7 8e-16
>seq157544
Length=1252
Score = 109 bits (120), Expect = 5e-19
Identities = 151/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140
|||||| || || ||||| || || || || | || || || | || || |||||
Sbjct 1236 ATGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGAGTGCGACCATCCTCTAGCTG 1177
Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTT 39199
|||||| ||||| || ||||||||||| || |||||| | || ||| || ||| ||||
Sbjct 1176 TTTGCCTGCAAAAATTAGACGCTGCTGATCCGGTGGG-ATGCCCTCCTTATCCTGAATTT 1118
Query 39200 TCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259
| ||| | || | | ||||||||||||||| || || | |||||| | ||||| |
Sbjct 1117 TAGCTTTCACATTCTCTATCGTATCGCTCGACTCAACCTCGAGTGTGATAGTCTTTCCAG 1058
Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTT 39288
| || || || || || ||||||||| ||
Sbjct 1057 TAAGGGTCTTTACGAATATTTGCATCGTT 1029
>seq171037
Length=1136
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115
||||||| || | | || ||||| || | || ||||| || |||||||||||||
Sbjct 1017 AGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGG 958
Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175
| ||| || ||| || || ||||| || ||||| || | || |||||||| | ||
Sbjct 957 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 898
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||||| || |||||| ||||| | |||| || || || || || |
Sbjct 897 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGA 838
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| |||| || || | || |||||||| ||||||||||| || |||||
Sbjct 837 CTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 789
>seq32333
Length=4216
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115
||||||| || | | || ||||| || | || ||||| || |||||||||||||
Sbjct 3759 AGCCTCCCCTGAGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGG 3818
Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175
| ||| || ||| || || ||||| || ||||| || | || |||||||| | ||
Sbjct 3819 ATAATGTACGACTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGG 3878
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||||| || |||||| ||||| | |||| || || || || || |
Sbjct 3879 GAATTCCTTCTTTATCTTGGATTTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGA 3938
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| |||| || || | || |||||||| ||||||||||| || |||||
Sbjct 3939 CTTCCAAAGTAATTGTCTTGCCCGTCAGAGTTTTAACAAAAATCTGCAT 3987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427889228943374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |