Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq171037 138 3e-27 seq32333 132 1e-25 seq270304 131 4e-25 seq59048 111 4e-19 seq256849 96.9 8e-15 seq72860 93.3 1e-13 >seq171037 Length=1136 Score = 138 bits (152), Expect = 3e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||| || ||||| || | ||||||||| | | || Sbjct 782 ACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGT 723 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || || ||||| || ||||| | |||||| || || |||||||| Sbjct 722 CCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACC 663 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || || ||||| | |||||| || | Sbjct 662 TTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAG 603 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 || || ||||| || |||| ||||| | || | |||||||||| Sbjct 602 AGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || ||||| | ||| |||||||| || | ||| ||||||| || || | Sbjct 1006 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 947 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 | |||||||| || || || || || || | |||||| ||||| || ||||| ||||| Sbjct 946 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 887 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || |||||||| ||| |||| | || | | ||||| | ||| || || || || Sbjct 886 TTATCTTGGAT-TTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGT 828 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 || ||||||||||||| |||||| Sbjct 827 AATTGTCTTGCCCGTCAGAGTTTT 804 >seq32333 Length=4216 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||| || ||||| || | ||||||||| | | || Sbjct 3994 ACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGT 4053 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || || ||||| || ||||| | |||||| || || |||||||| Sbjct 4054 CCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACC 4113 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || || ||||| | |||||| || | Sbjct 4114 TTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAG 4173 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || |||| ||||| | || | ||||||| Sbjct 4174 AGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || ||||| | ||| |||||||| || | ||| ||||||| || || | Sbjct 3770 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 3829 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 | |||||||| || || || || || || | |||||| ||||| || ||||| ||||| Sbjct 3830 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 3889 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || |||||||| ||| |||| | || | | ||||| | ||| || || || || Sbjct 3890 TTATCTTGGAT-TTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGT 3948 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 || ||||||||||||| |||||| Sbjct 3949 AATTGTCTTGCCCGTCAGAGTTTT 3972 >seq270304 Length=645 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||| ||||| ||||| | ||| || || | | || Sbjct 83 ACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGT 142 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||||||| ||||| | ||| || || | |||||||| Sbjct 143 ACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACC 202 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||||||| ||||| || | || | ||| || |||| Sbjct 203 TTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAG 262 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || ||||| | || | |||||| Sbjct 263 GGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304 >seq59048 Length=3006 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||||||||||| || || |||| | ||| ||||||||| ||| |||||||||| Sbjct 1925 ATGTCAAGGGTTGGTAAGGTTTTTCGCGTAACATCGAATTAAACCGCATGCTCCACCGCT 1866 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | | |||||| || ||||||||||||| |||||| |||| | |||| ||| Sbjct 1865 TGTGCGAGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCTCCAGGCGGA 1806 Query 7845 AT-ATTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 1805 GTGCTTAACGCGTTAGCT 1788 Score = 105 bits (116), Expect = 2e-17 Identities = 88/104 (85%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 1245 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 1303 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| ||||||| |||||||||||||||| ||||| || ||| Sbjct 1304 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAAT 1347 >seq256849 Length=689 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| ||||| ||||| ||||| | ||||| || | |||||| | ||||| Sbjct 627 AGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGACCATCC 568 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || || || || || || ||||| || || || || ||||| || Sbjct 567 TCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC 508 Query 225622 TGGATC 225627 || ||| Sbjct 507 TGAATC 502 >seq72860 Length=2592 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||||| || || || | ||||| || ||||| | ||||| | || ||| | ||||| Sbjct 484 CAACTATATAATGTATTAATTACTGCCCATGCAGTAATTATGGTATTTTTTATGATTATG 425 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | | || | || || || || |||| ||||| || | | || || || || ||| Sbjct 424 CCAGCTCTGTTTGGGGGATTTGGTAATTATTTCGTACCAATTTTAATAGGCGCCCCAGAT 365 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712 |||||||| |||||| | |||||||||||||| || ||||| Sbjct 364 ATGGCTTTCCCAAGGTTAAACAATATAAGTTTCTGGTTACT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187696858140212