Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq171037 138 3e-27
seq32333 132 1e-25
seq270304 131 4e-25
seq59048 111 4e-19
seq256849 96.9 8e-15
seq72860 93.3 1e-13
>seq171037
Length=1136
Score = 138 bits (152), Expect = 3e-27
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || ||||| || ||||| || ||||| || | ||||||||| | | ||
Sbjct 782 ACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGT 723
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| |||||||| || || || ||||| || ||||| | |||||| || || ||||||||
Sbjct 722 CCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACC 663
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||| ||||| ||| || || || ||||| | |||||| || |
Sbjct 662 TTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAG 603
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717
|| || ||||| || |||| ||||| | || | ||||||||||
Sbjct 602 AGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATTTTA 557
Score = 113 bits (124), Expect = 1e-19
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||| || || ||||| | ||| |||||||| || | ||| ||||||| || || |
Sbjct 1006 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 947
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
| |||||||| || || || || || || | |||||| ||||| || ||||| |||||
Sbjct 946 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 887
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|| |||||||| ||| |||| | || | | ||||| | ||| || || || ||
Sbjct 886 TTATCTTGGAT-TTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGT 828
Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698
|| ||||||||||||| ||||||
Sbjct 827 AATTGTCTTGCCCGTCAGAGTTTT 804
>seq32333
Length=4216
Score = 132 bits (146), Expect = 1e-25
Identities = 163/223 (73%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || ||||| || ||||| || ||||| || | ||||||||| | | ||
Sbjct 3994 ACGAAGACGAAGCACAAGATGAAGAGTTGACTCTTTCTGAATATTGTAATCTGATAGGGT 4053
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| |||||||| || || || ||||| || ||||| | |||||| || || ||||||||
Sbjct 4054 CCTGCCATCTTCGAGTTGTTTTCCAGCAAAAATAAGCCTTTGTTGATCAGGTGGAATACC 4113
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||| ||||| ||| || || || ||||| | |||||| || |
Sbjct 4114 TTCCTTGTCTTGAATCTTCGACTTTACGTTCTCTATTGTGTCACTTGATTCCACTTCAAG 4173
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| || |||| ||||| | || | |||||||
Sbjct 4174 AGTAATTGTCTTTCCAGTCAGTGTTTTGACAAATATTTGCATT 4216
Score = 113 bits (124), Expect = 1e-19
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||| || || ||||| | ||| |||||||| || | ||| ||||||| || || |
Sbjct 3770 AGTCTTAGCACCAGGTGCAAAGTAGATTCTTTCTGAATATTATAATCGGATAATGTACGA 3829
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
| |||||||| || || || || || || | |||||| ||||| || ||||| |||||
Sbjct 3830 CTGTCTTCTAGTTGTTTTCCGGCAAAAATTAATCGTTGCTGGTCAGGGGGAATTCCTTCT 3889
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|| |||||||| ||| |||| | || | | ||||| | ||| || || || ||
Sbjct 3890 TTATCTTGGAT-TTTAGCTTTGATGTTTTCCACTGTGTCACTTGATTCGACTTCCAAAGT 3948
Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698
|| ||||||||||||| ||||||
Sbjct 3949 AATTGTCTTGCCCGTCAGAGTTTT 3972
>seq270304
Length=645
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || || || ||||| ||||| ||||| | ||| || || | | ||
Sbjct 83 ACGAAGACGAAGAACTAGATGAAGAGTAGATTCCTTTTGTATATTATAGTCAGAAAGTGT 142
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| |||||||| ||||| | ||| || || | ||||||||
Sbjct 143 ACGACCATCTTCAAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGAGGGAATACC 202
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| ||||| |||||| ||||||| ||||| || | || | ||| || ||||
Sbjct 203 TTCCTTATCTTGTATCTTTGCCTTCACATTTTCGACAGTATTTGTCGGTTCAACTTCTAG 262
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || || || || ||||| | || | ||||||
Sbjct 263 GGTTATAGTTTTTCCGGTTAATGTTTTAACAAAAATTTGCAT 304
>seq59048
Length=3006
Score = 111 bits (122), Expect = 4e-19
Identities = 108/138 (78%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || |||||||||||| || || |||| | ||| ||||||||| ||| ||||||||||
Sbjct 1925 ATGTCAAGGGTTGGTAAGGTTTTTCGCGTAACATCGAATTAAACCGCATGCTCCACCGCT 1866
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844
| | | | | |||||| || ||||||||||||| |||||| |||| | |||| |||
Sbjct 1865 TGTGCGAGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCTCCAGGCGGA 1806
Query 7845 AT-ATTTACGCGTTAGCT 7861
| || |||||||||||
Sbjct 1805 GTGCTTAACGCGTTAGCT 1788
Score = 105 bits (116), Expect = 2e-17
Identities = 88/104 (85%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||
Sbjct 1245 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 1303
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869
|||||| ||||||| |||||||||||||||| ||||| || |||
Sbjct 1304 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAAT 1347
>seq256849
Length=689
Score = 96.9 bits (106), Expect = 8e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| ||||| ||||| ||||| | ||||| || | |||||| | |||||
Sbjct 627 AGGACAAGGTGTAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGACCATCC 568
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||||||||| || || || || || || || ||||| || || || || ||||| ||
Sbjct 567 TCTAGCTGCTTGCCTGCAAAAATTAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC 508
Query 225622 TGGATC 225627
|| |||
Sbjct 507 TGAATC 502
>seq72860
Length=2592
Score = 93.3 bits (102), Expect = 1e-13
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||||| || || || | ||||| || ||||| | ||||| | || ||| | |||||
Sbjct 484 CAACTATATAATGTATTAATTACTGCCCATGCAGTAATTATGGTATTTTTTATGATTATG 425
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| | | || | || || || || |||| ||||| || | | || || || || |||
Sbjct 424 CCAGCTCTGTTTGGGGGATTTGGTAATTATTTCGTACCAATTTTAATAGGCGCCCCAGAT 365
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712
|||||||| |||||| | |||||||||||||| || |||||
Sbjct 364 ATGGCTTTCCCAAGGTTAAACAATATAAGTTTCTGGTTACT 324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1187696858140212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |