Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq150668 208 6e-49 seq75644 194 1e-44 seq110960 190 2e-43 >seq150668 Length=1318 Score = 208 bits (230), Expect = 6e-49 Identities = 603/915 (66%), Gaps = 56/915 (6%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||||||| || ||||| ||||| ||||| |||||||| || | || ||||||||| Sbjct 1163 TGGTATTCGCCAACGCGCTTCTCGAAAAAATTGGTTTTGCCCTCCAGAGATATATTTTCC 1104 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA---TGTTTTTCAC--ACTTTAGAGCTACAA 4374 ||||||||||||||||| | ||| || | || | || | || ||| | Sbjct 1103 ATAAAATCAAACGGATTTTCGGAGTTCCAAATCTTCTTGTAACCAAGTTCAGAC-----A 1049 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 | | || ||||| ||||| ||||| || | | ||| || |||| || || ||||| | Sbjct 1048 GAAGACGATCAGCCACAAACTCTATGTAGCGACACATAAGAGCGCAATTCATCCCAATGA 989 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 || || || | || | || | ||| ||||| || || |||| || || |||| Sbjct 988 GACTGACGGGCAAAGCATCAGTGAGAAATTCTTGCTCAATTTTTACTGCCTCCTCCATTA 929 Query 4495 TATCTTTTATT---TTATCTTTAGATGGTTTATTTACTAAGTATCC--AAACAATAAACA 4549 || | || || |||| | |||| | | | | ||| | ||| | | || Sbjct 928 TAGAATGGATCCTCTTCTCTTCCG---GTTT-TGCAATGA-TATGCTTAAATAGGAGGCA 874 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 || ||||| ||||||| || || |||| || || || || || || || | || Sbjct 873 AGCGAAATCGCAATGCAGTCCCTCATCTCGACTTATAAGCTCATTGCTGAAGGTGAGGCC 814 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| | Sbjct 813 GGGCATAAGACCACGCTTTTTAAGCCAAAATATCGCGGCAAAGCTGCCTGAGAAGAAAAC 754 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT--A 4727 |||||||| || ||||| ||| | | || ||| | | ||||| | | | Sbjct 753 ACCTTCTACAGCTGCAAAAGCTGCGACACGTTCAGAGAATGGA--GAATTTGTATCTCCA 696 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAA--TTG-----TGTATAT 4780 ||||| | | ||||| | || ||||| | |||||| | ||| || || Sbjct 695 ATCCAGTCGAGAGCCCATTGCGCCTTTTTTCTGACGCACTCCAAGTTGCCGATTGCATTA 636 Query 4781 AGC-----GTT-----------AAATA-ATTT----ACTT--TTTTCAAATGGGTCTTGA 4817 ||| || ||| | || | |||| ||||||| | ||| Sbjct 635 AGCAAAAAGTCCCTACACAACAAAAGATATATGCCAACTTACTTTTCAACAGAATCTCTG 576 Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || ||||| || || || || |||||||||||||||||||| || ||||| || || Sbjct 575 ATGTAAGTATCAATAAGAAGAGAGTACATTTCAGAATGTATATTCTCAATAGCGATTTGT 516 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 | || ||||| || | | |||||| | |||||||| | | ||| | || | |||| Sbjct 515 ATGCCATAAAAACAGCGAACTTCTGGGATCTGAACTTCTTGGCTAAACCGCTCGA-TAAG 457 Query 4938 -TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 ||||| ||||| || ||||| || || ||||| || | ||| | ||||| |||| Sbjct 456 ATTTTCCAAAACTATCCCATCACTAGCAGCGAAAAATGCAAGAACGTAAGATAGAAAGCG 397 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056 | || | ||||||||| ||||| || || || ||||||| ||||||||||| || Sbjct 396 TCGCTCTCCCGGCTTAAGTGAATTCCAATGAGGAAAGTCTTTAGACAAATCAACTTCCTC 337 Query 5057 AACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAAT 5116 || ||||| || || || | ||||| || || | |||||| |||||||||| ||| Sbjct 336 TACTGTCCAGAAGGAAGCCACAGCTTTCTTATAGAATTTCCAAATGTCAGGATACTCAAT 277 Query 5117 CGGAAGTATGACAAA 5131 |||| || ||||| Sbjct 276 GGGAAACATTACAAA 262 >seq75644 Length=2520 Score = 194 bits (214), Expect = 1e-44 Identities = 589/910 (65%), Gaps = 39/910 (4%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||||||||| || ||||| || ||||| || |||||||| || | ||| ||||| Sbjct 583 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTTGTTTTGCCCTCGATCGAGATATT 642 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||||||||||| ||||| || || || || || | || | || Sbjct 643 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTATAG 702 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || || |||||||| | || ||| ||| | || ||||| || ||||| | Sbjct 703 CAAGCGATCGGCAACAAATTCGAGGTAACGGCACATCATATCACAGTTCATGCCAATCAG 762 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | | || |||| || | | || || | | |||||| | || || ||| ||| Sbjct 763 TTTTACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATAT 822 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 | | | | || ||| || || || || | | | |||| | || ||||| Sbjct 823 AGCATAAACACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAAA 882 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 || || | |||||||| | ||||| ||||| || || || || || ||||| Sbjct 883 GTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCAT 942 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || | ||| |||||||||||||||| ||||| || |||||||| | ||||| Sbjct 943 CAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTTC 1002 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT--AATCCAT 4733 | || ||||| ||| | | || | |||| || |||||| | |||||| Sbjct 1003 GATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGT--TGACTTTGTATCACCAATCCAG 1060 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCA--CG-GAATTGTGTATATAGCGTTAAAT 4790 | | ||||| | || ||||| | || || || | ||||| || || ||||| Sbjct 1061 TCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTTGTG---ATGGCATTAAAC 1117 Query 4791 AA----------------------TT-----TACTT--TTTTCAAATGGGTCTTGAATAT 4821 || || ||| | ||||| | ||| ||| | |||| Sbjct 1118 AAGAAATCTCTAAGAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGATAT 1177 Query 4822 AAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATC 4881 | || || || || || | |||||| || || || ||||||||||| || ||||| | | Sbjct 1178 ATGTATCAATCAGAAGACAATACATCTCCGAGTGAATATTTTCTATTGCCATCTGCATGC 1237 Query 4882 CGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTT 4941 |||||||||||| | || | |||||||||||| | || ||| | ||| || | |||| Sbjct 1238 CGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATTTT 1297 Query 4942 CGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTT 5001 | || || || |||||||| || || || || | ||| | |||||||| | | | Sbjct 1298 CCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCGCT 1357 Query 5002 CGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAG 5061 | | ||||||||| | ||| || | ||||| | |||||||| |||||||| | Sbjct 1358 CTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAACTG 1417 Query 5062 TCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||| || || || | || |||||||| | ||| ||||| ||||| || || || | Sbjct 1418 ACCAGAATGAAGCAACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGGCA 1477 Query 5122 GTATGACAAA 5131 ||| ||||| Sbjct 1478 ATATCACAAA 1487 >seq110960 Length=1818 Score = 190 bits (210), Expect = 2e-43 Identities = 591/912 (65%), Gaps = 42/912 (5%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||||||||| || ||||| || ||||| || |||||||| || | ||| ||||| Sbjct 1236 TTTTTGGTATTCCCCAACACGCTTCTCAAAGAAGTTCGTTTTGCCCTCGATCGAGATATT 1177 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGC-TACAA 4374 |||||||||||||| ||||| || || || || || | || | |||| Sbjct 1176 CTCCATAAAATCAAAGGGATTCTCAGCATTCCAAATCTTCTCGTAACCAAGCTCGTACA- 1118 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 |||| || || || |||||||| | || ||| ||| | || ||||| || ||||| | Sbjct 1117 GCAAGCGATCGGCAACAAATTCGAGGTAGCGGCACATCATATCACAGTTCATGCCAATCA 1058 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | | || |||| || | | || || | | |||||| | || || ||| || Sbjct 1057 GTTTGACGGGTAAGGCCTCATTAAAGAAAGCCTTTTCTATCTCCAATGCCTCCTTGAATA 998 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 || | | | || ||| || || || || | | | |||| | || |||| Sbjct 997 TAGCATAAACACGTTCCTTATCGGGCTTTTTCACGATATGTTTGAACAGAAGGCAAGCAA 938 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | || || | |||||||| | ||||| ||||| || || || || || |||| Sbjct 937 AGTCGGTGTGAAGGCCTTCGTCGCGACTAATAAGTTCATTGCTGAAGGTCAAGCCTGGCA 878 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | || | ||| |||||||||||||||| ||||| || |||||||| | |||| Sbjct 877 TCAGGCCACGCTTCTTAAGCCAAAATATAGACGCAAAACTGCCGGAAAAGAAGACTCCTT 818 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT--AATCCA 4732 | | || ||||| ||| | | || | |||| || |||||| | |||||| Sbjct 817 CGATTGCAGCAAAGGCTGCAATACGCTCGGCAAACGT--TGACTTTGTATCACCAATCCA 760 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCA--CGGAATT-GTGTATATAGCGTTAAA 4789 | | ||||| | || ||||| | || || || || ||| || || ||||| Sbjct 759 GTCAAGGGCCCACTGCGCCTTTTTGTGTACACAATCGAGGTTCGTG---ATGGCATTAAA 703 Query 4790 TAA-----------------------TT-----TACTT--TTTTCAAATGGGTCTTGAAT 4819 || || ||| | ||||| | ||| ||| | || Sbjct 702 CAAGAAATCTCTAAGAAAACTTAGATTTAAAAATACATACTTTTCCACTGGATCTCGGAT 643 Query 4820 ATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAA 4879 ||| || || || || || | |||||| || ||||| ||||||||||| || ||||| | Sbjct 642 ATACGTATCAATCAGAAGACAATACATCTCCGAATGAATATTTTCTATTGCCATCTGCAT 583 Query 4880 TCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTT 4939 ||||||||||||| | || | |||||||||||| | || ||| | ||| || | || Sbjct 582 GCCGTAAAAGCATCGGACCTCGGGTACTTGAACTTCTTGACTAAACCGTTCCACCAGATT 523 Query 4940 TTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTG 4999 ||| || || || |||||||| || || || || | ||| | |||||||| | | Sbjct 522 TTCCAGCACAATTCCATCACTGGCAGCGAAGAAAGCGAGAACGTACGATATAAAATGTCG 463 Query 5000 TTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAAC 5059 || | ||||||||| | ||| || | ||||| | |||||||| |||||||| Sbjct 462 CTCTCCTGGCTTAAGTGCATCCCATTGCACAATGTCTTTGGACAAATCAACCTCTTCAAC 403 Query 5060 AGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 | ||| || || || | || |||||||| | ||| ||||| ||||| || || || Sbjct 402 TGACCAGAATGAAGCGACAGCCTTTTTGTAAAATTGCCAGATATCCGGATATTGGATTGG 343 Query 5120 AAGTATGACAAA 5131 | ||| || || Sbjct 342 CAATATCACGAA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425402853770534